Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000115-TA|BGIBMGA000115-PA|undefined
         (641 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    29   0.075
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         26   0.92 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   3.7  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   6.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   6.5  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   6.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   8.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 29.5 bits (63), Expect = 0.075
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 72  DERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSE 131
           ++ P   K QE        K V++++   +   ++ IK++ ++ +++          + +
Sbjct: 849 EKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVK-IKREAEDRDEDERSFHSNGAKEED 907

Query: 132 DDKPNVSE-ASPSGRAKS---KKKHNSDSDFSPPRRGNPVKRNNSPK 174
           +DKP+VS   SP   A++       NS S  S  R G P   N   K
Sbjct: 908 EDKPSVSPLTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRK 954



 Score = 22.6 bits (46), Expect = 8.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 125 KMYSDSEDDKPNVSEAS--PSGR---------AKSKKKHNSDSDFSPPRR 163
           K  +DS+ D  N+S+    PSG            S+K+ N DS   PP R
Sbjct: 214 KSDADSDSDVVNLSKPGTPPSGEPGNGPLDLSVSSRKRSNDDSVSQPPNR 263


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 25.8 bits (54), Expect = 0.92
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 97  DGFNSKLQIQEIKKDVKETEKENE-LVFGKMYSDSEDDKPNVSEAS-PSGRAKSKKKHNS 154
           DG+     + E  K  +  EK +E L   K   ++   + N++  S P   ++S+ +HN 
Sbjct: 153 DGWLFGDNLSERMKTTRALEKTSEELKIPKAKINTGKTQYNLNSKSLPRQYSQSRGRHNQ 212

Query: 155 DSDFSPPRRGNPVKRNNSPKRTTEYDSDLSPPRKH 189
                 P+ G   +   +P           P RKH
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPRTSRTEPPRRKH 247


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 73  ERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKM 126
           E+P     QE+ TT S    V QDD      Q++ + K V  T  +  L FGK+
Sbjct: 311 EKPSSSSNQEKTTTESAKISVIQDDA-----QMR-LNKHVTTTYPKQPLRFGKI 358


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 11/60 (18%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 77  HIKKQEQFTTSSKW--KIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDK 134
           +  K +   +S  W  ++ NQ     ++ ++ +IK+DV++ ++ ++ ++  ++  S  D+
Sbjct: 269 YFPKLDSLVSSRAWPSRVANQKLRDLNR-EVDQIKQDVEDLKRWSDRIYAAIHQGSVTDE 327


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 188 KHEGQRAEKLKKPSRWDNEQDKSPKSLRANNHRRSKS 224
           K + +   K+  P    NE   SP+S  +NN    K+
Sbjct: 139 KFKKEEKNKVVTPKTSPNEASMSPQSTSSNNSASPKA 175


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 188 KHEGQRAEKLKKPSRWDNEQDKSPKSLRANNHRRSKS 224
           K + +   K+  P    NE   SP+S  +NN    K+
Sbjct: 159 KFKKEEKNKVVTPKTSPNEASMSPQSTSSNNSASPKA 195


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 200 PSRWDNEQDKSPKSLRANNHRRSKSSDLS 228
           PS W+  +  +  + R+ + RR+K  +++
Sbjct: 136 PSYWEKRRKNNEAAKRSRDARRAKEDEIA 164


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,225
Number of Sequences: 317
Number of extensions: 5773
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 641
length of database: 114,650
effective HSP length: 61
effective length of query: 580
effective length of database: 95,313
effective search space: 55281540
effective search space used: 55281540
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 46 (22.6 bits)