Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000114-TA|BGIBMGA000114-PA|undefined
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    29   1.3  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.9  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   2.9  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    26   8.8  

>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 139 SFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFLAARTSL 182
           SF   D  K    A  S Y P+RE+L  +P   L D+LA + S+
Sbjct: 216 SFSSFDTCKKHMKASHSLYIPEREYLVDEP--SLFDYLAEKISI 257


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 50  AKDLKDILITL-KFNKPPPNITPEVLFSKLEGKLKDTIQKEGEQLVGKPLYNKALSDKD 107
           A D + I+ TL KFN        ++ F KL G+   TI K  ++L  +P+  K+  DK+
Sbjct: 134 ALDSEMIIATLEKFNWRENITIHKLTFQKLLGRGNSTINKSAQKLNNQPI-EKSSVDKE 191


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 138 QSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSD-FLAARTSLLQVEKTSSATVRKN 196
           +SF   + L+T  D I++     R+ L      KLSD F+  R+ L +V K      +  
Sbjct: 145 KSFVELNALQTSIDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYKDQ 204

Query: 197 -----TRSDVNKVLIGQFXXXXXXXXXXXXXXRKFQTYEVPPGGYDQNRGRYE 244
                 R D    L   +              R F+TYE       Q + R E
Sbjct: 205 RKLIAERDDEKTALDDLYNQRRALQREYDTQLRAFRTYEREQRAKRQEQFRLE 257


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 79  EGKLKDTIQKEGEQLVGKPLYNKALSDKDWKQ 110
           E  ++D   ++ EQ VG+P+  +++SD + +Q
Sbjct: 211 EELIEDDYAEQPEQAVGQPIEQQSISDDEARQ 242


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,279
Number of Sequences: 5004
Number of extensions: 40799
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 4
length of query: 339
length of database: 2,362,478
effective HSP length: 73
effective length of query: 266
effective length of database: 1,997,186
effective search space: 531251476
effective search space used: 531251476
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 54 (25.8 bits)