Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000114-TA|BGIBMGA000114-PA|undefined
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04895.1 68418.m00514 helicase domain-containing protein simi...    30   2.5  
At1g79370.1 68414.m09249 cytochrome P450 family protein similar ...    28   7.8  

>At5g04895.1 68418.m00514 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579;contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain, PF00035: Double-stranded RNA binding
           motif
          Length = 581

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 32  RPQDKGSGMEIVMRESPTAKDLKDILITLKFNKPPPNITPEVLFSKLEGKLKDTIQKEGE 91
           RP     G     ++    K L   L+    + PP   T  +  ++        ++ +G 
Sbjct: 462 RPSQPQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRA----LVEFKGM 517

Query: 92  QLVGKPLYNKALSDKD 107
           Q VGKP  NK L++KD
Sbjct: 518 QFVGKPQRNKTLAEKD 533


>At1g79370.1 68414.m09249 cytochrome P450 family protein similar to
           cytochrome P450 GI:984542 [Sorghum bicolor]; similar to
           cytochrome P450 GI:6739530 [Manihot esculenta]
          Length = 546

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 20  SELMAARMVNVDRPQDKGSGMEIVMRESPTAKDLKDILITLKFNKPPPNITPE 72
           ++++    + + R Q+K         + P  KD  DIL TLK     P +TP+
Sbjct: 273 NKMIIDEKIELWRGQNKDYNRAETKNDVPMIKDWLDILFTLKDENGKPLLTPQ 325


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,164,619
Number of Sequences: 28952
Number of extensions: 211582
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 2
length of query: 339
length of database: 12,070,560
effective HSP length: 82
effective length of query: 257
effective length of database: 9,696,496
effective search space: 2491999472
effective search space used: 2491999472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)