GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000114-TA|BGIBMGA000114-PA|undefined
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0706 - 6120305-6120481                                           29   7.1  

>12_01_0706 - 6120305-6120481
          Length = 58

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 44 MRESPTAKDLKDILITLKFNKPPPNITP 71
          + E+PT      +L+ L+FN PPP   P
Sbjct: 25 LHEAPTMASATRVLLQLRFNGPPPPEVP 52


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,420,126
Number of Sequences: 37544
Number of extensions: 246321
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 1
length of query: 339
length of database: 14,793,348
effective HSP length: 82
effective length of query: 257
effective length of database: 11,714,740
effective search space: 3010688180
effective search space used: 3010688180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)