GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000114-TA|BGIBMGA000114-PA|undefined
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37324| Best HMM Match : NuiA (HMM E-Value=3)                        73   3e-13
SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)                   35   0.11 
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)               32   0.77 
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.77 
SB_6625| Best HMM Match : Strep_SA_rep (HMM E-Value=0.00019)           31   1.3  
SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   28   9.5  

>SB_37324| Best HMM Match : NuiA (HMM E-Value=3)
          Length = 191

 Score = 73.3 bits (172), Expect = 3e-13
 Identities = 31/72 (43%), Positives = 51/72 (70%)

Query: 137 IQSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFLAARTSLLQVEKTSSATVRKN 196
           IQSF WSDR KT+KD + +T+ P R+ +     V ++D +AART LL+  +TS+ T+R+ 
Sbjct: 72  IQSFGWSDRAKTKKDEMVATFTPARKEMAVSAPVAIADIVAARTDLLRQPRTSTGTIRER 131

Query: 197 TRSDVNKVLIGQ 208
           T+  +N++L+G+
Sbjct: 132 TKCAINRILMGK 143


>SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)
          Length = 822

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 16/83 (19%), Positives = 29/83 (34%)

Query: 229 YEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQSGYXXX 288
           Y+    GYD +   Y+                     ++  GY +++ GY ++  GY   
Sbjct: 554 YDTSIQGYDTSTQGYDTSTQGYDTSIQVYDTSTQRYDTSTHGYDTSRQGYDTSTQGYDTS 613

Query: 289 XXXXXXXXXGYDSNRSSFDNSRG 311
                    GYD++   +D   G
Sbjct: 614 TQGYDTSTQGYDTSIQVYDTHTG 636



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/86 (16%), Positives = 29/86 (33%)

Query: 224 RKFQTYEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQS 283
           +  + Y+     YD +   Y+                     ++   Y ++  GY +++ 
Sbjct: 542 KTIEGYDTSTHRYDTSIQGYDTSTQGYDTSTQGYDTSIQVYDTSTQRYDTSTHGYDTSRQ 601

Query: 284 GYXXXXXXXXXXXXGYDSNRSSFDNS 309
           GY            GYD++   +D S
Sbjct: 602 GYDTSTQGYDTSTQGYDTSTQGYDTS 627



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/76 (18%), Positives = 26/76 (34%)

Query: 227 QTYEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQSGYX 286
           Q Y+    GYD +   Y+                     +++ GY ++  GY ++  GY 
Sbjct: 559 QGYDTSTQGYDTSTQGYDTSIQVYDTSTQRYDTSTHGYDTSRQGYDTSTQGYDTSTQGYD 618

Query: 287 XXXXXXXXXXXGYDSN 302
                       YD++
Sbjct: 619 TSTQGYDTSIQVYDTH 634


>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 137 IQSFEWSDRLKTQKD---AIQSTYRPKREHLKPKPDVKLSDFLAA 178
           I SF  +D +K  K     +Q   RP   ++KP+P +   DF+AA
Sbjct: 139 ISSFNMADAMKRAKVLDWGLQEQLRPHMVNMKPRPSIYCPDFIAA 183


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 137 IQSFEWSDRLKTQKD---AIQSTYRPKREHLKPKPDVKLSDFLAA 178
           I SF  +D +K  K     +Q   RP   ++KP+P +   DF+AA
Sbjct: 14  ISSFNMADAMKRAKVLDWGLQEQLRPHMVNMKPRPSIYCPDFIAA 58


>SB_6625| Best HMM Match : Strep_SA_rep (HMM E-Value=0.00019)
          Length = 128

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/79 (21%), Positives = 26/79 (32%)

Query: 229 YEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQSGYXXX 288
           YE    GY+     YE                     S   GY S+ +G+ S  +GY   
Sbjct: 2   YESAIAGYESAIAGYESAIAGYESAIAGYKSTIAGYKSTIAGYESSIAGHESTIAGYEST 61

Query: 289 XXXXXXXXXGYDSNRSSFD 307
                    GY+S  + ++
Sbjct: 62  IAGYESAIAGYESTIAGYE 80



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/81 (20%), Positives = 27/81 (33%)

Query: 229 YEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQSGYXXX 288
           YE    GY+     Y+                     S   GY S  +GY S  +GY   
Sbjct: 16  YESAIAGYESAIAGYKSTIAGYKSTIAGYESSIAGHESTIAGYESTIAGYESAIAGYEST 75

Query: 289 XXXXXXXXXGYDSNRSSFDNS 309
                    GY+S  + ++++
Sbjct: 76  IAGYELAIAGYESAIAGYESA 96



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/110 (16%), Positives = 31/110 (28%)

Query: 229 YEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQSGYXXX 288
           YE    GY+     YE                     S+  G+ S  +GY S  +GY   
Sbjct: 9   YESAIAGYESAIAGYESAIAGYKSTIAGYKSTIAGYESSIAGHESTIAGYESTIAGYESA 68

Query: 289 XXXXXXXXXGYDSNRSSFDNSRGSXXXXXXXXXXXXXXXXDSLGNYNQGI 338
                    GY+   + ++++                    ++  Y   I
Sbjct: 69  IAGYESTIAGYELAIAGYESAIAGYESAIAGHESTIAGYESAIAGYESAI 118


>SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 18/79 (22%), Positives = 25/79 (31%)

Query: 229 YEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQSGYXXX 288
           YE    GY      Y+                     S+  GY S  +GY S  +GY   
Sbjct: 89  YESAIAGYKSTIAGYKSTIAGYKSTIAGYESYIAGYESSIAGYESAIAGYESAIAGYESA 148

Query: 289 XXXXXXXXXGYDSNRSSFD 307
                    GY+S  + +D
Sbjct: 149 IAGYESAIAGYESTIAGYD 167



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/108 (17%), Positives = 31/108 (28%)

Query: 229 YEVPPGGYDQNRGRYEXXXXXXXXXXXXXXXXXXXXTSNQPGYTSNQSGYTSNQSGYXXX 288
           Y+    GY      YE                     S   GY S  +GY S  +GY   
Sbjct: 61  YKSTIAGYKSTIAGYESTIVGHGPTIAGYESAIAGYKSTIAGYKSTIAGYKSTIAGYESY 120

Query: 289 XXXXXXXXXGYDSNRSSFDNSRGSXXXXXXXXXXXXXXXXDSLGNYNQ 336
                    GY+S  + ++++                    ++  Y+Q
Sbjct: 121 IAGYESSIAGYESAIAGYESAIAGYESAIAGYESAIAGYESTIAGYDQ 168


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 137  IQSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFLAARTSLLQ-VEKTSSATVRK 195
            ++S +  + +   +DA + + +     L PKPDVK   F + +   LQ  +K     + +
Sbjct: 1143 LESTQKFEEIDLSQDAKEKSAQQMTPSLGPKPDVKSLSFPSDKVGALQNTQKFEEIDLSQ 1202

Query: 196  NTRSDVNK 203
            +T+   +K
Sbjct: 1203 DTKEGTSK 1210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,747,458
Number of Sequences: 59808
Number of extensions: 297502
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 27
length of query: 339
length of database: 16,821,457
effective HSP length: 83
effective length of query: 256
effective length of database: 11,857,393
effective search space: 3035492608
effective search space used: 3035492608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)