GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000114-TA|BGIBMGA000114-PA|undefined
         (339 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC060860-1|AAH60860.2|  518|Homo sapiens family with sequence si...   135   2e-31
AK074867-1|BAC11255.1|  519|Homo sapiens protein ( Homo sapiens ...   131   4e-30
BC093898-1|AAH93898.1|  330|Homo sapiens family with sequence si...    97   6e-20
AK095745-1|BAC04621.1|  330|Homo sapiens protein ( Homo sapiens ...    97   6e-20
BC117258-1|AAI17259.1|  349|Homo sapiens family with sequence si...    70   1e-11
BC020907-1|AAH20907.1|  189|Homo sapiens Unknown (protein for IM...    62   3e-09

>BC060860-1|AAH60860.2|  518|Homo sapiens family with sequence
           similarity 98, member A protein.
          Length = 518

 Score =  135 bits (327), Expect = 2e-31
 Identities = 80/211 (37%), Positives = 115/211 (54%), Gaps = 10/211 (4%)

Query: 1   MSSRLQSKDDRLLLLDYLISELMAARMVNVDRPQDK---GSGMEIVMRESPTAKDLKDIL 57
           ++ RL  + + LLLL YLISEL AARM+ V+ P  K   G G E+        ++LK I 
Sbjct: 98  VTKRLLIQKNCLLLLTYLISELEAARMLCVNAPPKKAQEGGGSEVF-------QELKGIC 150

Query: 58  ITLKFNKPPPNITPEVLFSKLEGKLKDTIQKEGEQLVGKPLYNKALSDKDWKQLETSFTE 117
           I L  +KPP NIT    FS +E KLK+T+ K     VGKPL  K +    W+++E     
Sbjct: 151 IALGMSKPPANITMFQFFSGIEKKLKETLAKVPPNHVGKPLLKKPMGPAHWEKIEAINQA 210

Query: 118 MFXXXXXXXXXXXXXXXXXIQSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFLA 177
           +                  +QSF WSDR K+Q + +   Y+PKR  L PK  + ++  LA
Sbjct: 211 IANEYEVRRKLLIKRLDVTVQSFGWSDRAKSQTEKLAKVYQPKRSVLSPKTTISVAHLLA 270

Query: 178 ARTSLLQVEKTSSATVRKNTRSDVNKVLIGQ 208
           AR  L ++ +TSS ++R+ T   +NKVL+G+
Sbjct: 271 ARQDLSKILRTSSGSIREKTACAINKVLMGR 301


>AK074867-1|BAC11255.1|  519|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90386 fis, clone NT2RP2005378, weakly similar to
           GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8 PRECURSOR.
           ).
          Length = 519

 Score =  131 bits (316), Expect = 4e-30
 Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 11/212 (5%)

Query: 1   MSSRLQSKDDRLLLLDYLISELMAARMVNVDRPQDK---GSGMEIVMRESPTAKDLKDIL 57
           ++ RL  + + LLLL YLISEL AARM+ V+ P  K   G G E+        ++LK I 
Sbjct: 98  VTKRLLIQKNCLLLLTYLISELEAARMLCVNAPPKKAQEGGGSEVF-------QELKGIC 150

Query: 58  ITLKFNKPPPNITPEVLFSKLEGK-LKDTIQKEGEQLVGKPLYNKALSDKDWKQLETSFT 116
           I L  +KPP NIT    FS +E K LK+T+ K     VGKPL  K +    W+++E    
Sbjct: 151 IALGMSKPPANITMFQFFSGIEKKKLKETLAKVPPNHVGKPLLKKPMGPAHWEKIEAINQ 210

Query: 117 EMFXXXXXXXXXXXXXXXXXIQSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFL 176
            +                  +QSF WSDR K+Q + +   Y+PKR  L PK  + ++  L
Sbjct: 211 AIANEYEVRRKLLIKRLDVTVQSFGWSDRAKSQTEKLAKVYQPKRSVLSPKTTISVAHLL 270

Query: 177 AARTSLLQVEKTSSATVRKNTRSDVNKVLIGQ 208
           AAR  L ++ +TSS ++R+ T   +NKVL+G+
Sbjct: 271 AARQDLSKILRTSSGSIREKTACAINKVLMGR 302


>BC093898-1|AAH93898.1|  330|Homo sapiens family with sequence
           similarity 98, member B protein.
          Length = 330

 Score = 97.5 bits (232), Expect = 6e-20
 Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 6/204 (2%)

Query: 1   MSSRLQSKDDRLLLLDYLISELMAARMVNVDRPQDKGSGMEIVMRESPTAKDLKDILITL 60
           +  RL+ K+D L LL +L +EL A++++     + K S ++   + S   ++++ +  TL
Sbjct: 103 IKDRLKKKEDCLKLLLFLSTELQASQILQ--NKKHKNSQLD---KNSEVYQEVQAMFDTL 157

Query: 61  KFNKPPPNITPEVLFSKLEGKLKDTIQKEGEQLVGKPLYNKALSDKDWKQLETSFTEMFX 120
              K   +  P +L +++E K+KD + K  +  VGKPL    L+ +  +QLE     +  
Sbjct: 158 GIPKSTTSDIPHML-NQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSC 216

Query: 121 XXXXXXXXXXXXXXXXIQSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFLAART 180
                           +QSF WSDR K + D I   Y+PKR  L PK  + ++  LAAR 
Sbjct: 217 EYECRRRMLMKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSPKTTITMAHLLAARE 276

Query: 181 SLLQVEKTSSATVRKNTRSDVNKV 204
            L ++ +TSS T R+ T   +NKV
Sbjct: 277 DLSKIIRTSSGTSREKTACAINKV 300


>AK095745-1|BAC04621.1|  330|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38426 fis, clone FEBRA2012507. ).
          Length = 330

 Score = 97.5 bits (232), Expect = 6e-20
 Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 6/204 (2%)

Query: 1   MSSRLQSKDDRLLLLDYLISELMAARMVNVDRPQDKGSGMEIVMRESPTAKDLKDILITL 60
           +  RL+ K+D L LL +L +EL A++++     + K S ++   + S   ++++ +  TL
Sbjct: 103 IKDRLKKKEDCLKLLLFLSTELQASQILQ--NKKHKNSQLD---KNSEVYQEVQAMFDTL 157

Query: 61  KFNKPPPNITPEVLFSKLEGKLKDTIQKEGEQLVGKPLYNKALSDKDWKQLETSFTEMFX 120
              K   +  P +L +++E K+KD + K  +  VGKPL    L+ +  +QLE     +  
Sbjct: 158 GIPKSTTSDIPHML-NQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSC 216

Query: 121 XXXXXXXXXXXXXXXXIQSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFLAART 180
                           +QSF WSDR K + D I   Y+PKR  L PK  + ++  LAAR 
Sbjct: 217 EYECRRRMLMKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSPKTTITMAHLLAARE 276

Query: 181 SLLQVEKTSSATVRKNTRSDVNKV 204
            L ++ +TSS T R+ T   +NKV
Sbjct: 277 DLSKIIRTSSGTSREKTACAINKV 300


>BC117258-1|AAI17259.1|  349|Homo sapiens family with sequence
           similarity 98, member C protein.
          Length = 349

 Score = 70.1 bits (164), Expect = 1e-11
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 12  LLLLDYLISELMAARMV---NVDRPQDKGSGMEIVMRESPTAKDLKDILITLKFNKPPPN 68
           L LL +L SEL A R++   ++  P  +    E V+  +   ++L   L  L   +P P 
Sbjct: 113 LRLLRFLCSELQATRLLCLRSLLDPSPRPPLGEGVVEGAGMVQELDLTLQALGLPRPAPG 172

Query: 69  ITPEVLFSKLEGKLKDTIQKEGEQLVGKPLYNKALSDKDWKQLETSFTEMFXXXXXXXXX 128
                L  +L  K+ + +Q        +PL + +L    W+ LE+    +          
Sbjct: 173 TPASQLLQELHAKISE-LQPSLPPGSLQPLLSCSLDAPRWEALESLSQSLRDQYRCRRCL 231

Query: 129 XXXXXXXXIQSFEWSDRLKTQKDAIQSTYRPKREHLKPKPDVKLSDFLAARTSLLQVEKT 188
                     +F WSDR + Q +A+++   P RE L P+ D+ ++  LAAR  L  +   
Sbjct: 232 LLKRLDLTTSAFHWSDRAEAQGEAMRAVLIPIREVLTPESDISIAHVLAARADLSCLVPA 291

Query: 189 SSATVRKNTRSDVNKVLIG 207
           +S  VR+ T   +NKVL+G
Sbjct: 292 TSVAVRRGTCCAINKVLMG 310


>BC020907-1|AAH20907.1|  189|Homo sapiens Unknown (protein for
           IMAGE:4721324) protein.
          Length = 189

 Score = 62.1 bits (144), Expect = 3e-09
 Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 10/92 (10%)

Query: 1   MSSRLQSKDDRLLLLDYLISELMAARMVNVDRPQDK---GSGMEIVMRESPTAKDLKDIL 57
           ++ RL  + + LLLL YLISEL AARM+ V+ P  K   G G E+        ++LK I 
Sbjct: 98  VTKRLLIQKNCLLLLTYLISELEAARMLCVNAPPKKAQEGGGSEVF-------QELKGIC 150

Query: 58  ITLKFNKPPPNITPEVLFSKLEGKLKDTIQKE 89
           I L  +KPP NIT    FS +E KLK+T+ K+
Sbjct: 151 IALGMSKPPANITMFQFFSGIEKKLKETLAKK 182


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,432,636
Number of Sequences: 224733
Number of extensions: 1275844
Number of successful extensions: 1631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1617
Number of HSP's gapped (non-prelim): 6
length of query: 339
length of database: 73,234,838
effective HSP length: 90
effective length of query: 249
effective length of database: 53,008,868
effective search space: 13199208132
effective search space used: 13199208132
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 66 (30.7 bits)