Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000114-TA|BGIBMGA000114-PA|undefined
(339 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical pr... 58 1e-08
AF039047-14|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m... 29 3.6
AF039047-13|AAM15589.1| 978|Caenorhabditis elegans Human mlk (m... 29 3.6
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z68104-1|CAA92112.1| 866|Caenorhabditis elegans Hypothetical pr... 29 6.2
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 29 6.2
Z46793-2|CAA86771.1| 322|Caenorhabditis elegans Hypothetical pr... 28 8.3
>U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical
protein C33H5.10 protein.
Length = 348
Score = 57.6 bits (133), Expect = 1e-08
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 11/200 (5%)
Query: 3 SRLQSKDDRLLLLDYLISELMAARMVNVDRPQDKGSGMEIVM--RESPTAKDLKDILITL 60
+R QS + LL +L SE+ AR++ R + SG EIV R+ + L TL
Sbjct: 66 TRFQSSSAKKLLESFLDSEVKTARLITRQRIE---SG-EIVSEKRDLELTPLIDSALRTL 121
Query: 61 KFNKPPPNITPEVLFSKLEGKLKDTIQKEGEQLVGKPLYNKALSDKDWKQLETSFTEMFX 120
F K N L L K + + PL+ L + ++E
Sbjct: 122 NFPKQAGNSNEWKLLETLRQKTDGRVSQSQRH----PLFKATLDENTLPEIEKQCESFSR 177
Query: 121 XXXXXXXXXXXXXXXXIQSFEWSDRLKTQKDAIQSTYRPKREHL-KPKPDVKLSDFLAAR 179
++SF W+DRLK ++ IQS + + + + K + ++ L+A
Sbjct: 178 DFYNRLLLLNSRLKVTVESFLWNDRLKMHRENIQSILSARVDEIGRVKANSDVAHLLSAS 237
Query: 180 TSLLQVEKTSSATVRKNTRS 199
+SLL ++K SS R+ T+S
Sbjct: 238 SSLLYIQKASSMDRRERTKS 257
>AF039047-14|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform a
protein.
Length = 1040
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 35 DKGSGMEIVMRESPTAKDLKDILITLKFNKPPPNITPEVLFSKLEGKLKDT-IQKEGEQL 93
+KG + I K L L+ N P T + F + + KDT +Q+ ++
Sbjct: 410 NKGQNLSIGDSCPDRWKKLMQDCWNLEPNFRPKFSTLAISFKQYAKEFKDTHLQRAPSKM 469
Query: 94 VGKPLYNKALSDKDWKQLETSFTEMF 119
K LY++ +DK ++ E F +++
Sbjct: 470 AVKELYSECFADKTKEEFEKRFHDLY 495
>AF039047-13|AAM15589.1| 978|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform b
protein.
Length = 978
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 35 DKGSGMEIVMRESPTAKDLKDILITLKFNKPPPNITPEVLFSKLEGKLKDT-IQKEGEQL 93
+KG + I K L L+ N P T + F + + KDT +Q+ ++
Sbjct: 410 NKGQNLSIGDSCPDRWKKLMQDCWNLEPNFRPKFSTLAISFKQYAKEFKDTHLQRAPSKM 469
Query: 94 VGKPLYNKALSDKDWKQLETSFTEMF 119
K LY++ +DK ++ E F +++
Sbjct: 470 AVKELYSECFADKTKEEFEKRFHDLY 495
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 23 MAARMVNVDRPQDKGSGMEIVMRESPTAKDLKDILITLKFNKPP-PNITP 71
+A + N+DR + ME V+RE K++ I + N+PP P + P
Sbjct: 470 LAEQFANLDRDAKLLTPMEFVLREHALLKNVSADAIRVLCNRPPLPPLPP 519
>Z68104-1|CAA92112.1| 866|Caenorhabditis elegans Hypothetical
protein F08B12.1 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 149 QKDAIQSTYRPKREHLKPKPDVKLSDFLAARTSLLQVEKTSSATVRKNTRSDVNKV 204
+KDA R ++ P+++ D +R+ L +EK +S V K ++ +N +
Sbjct: 583 EKDAYNQLQISLRTTMENMPEIRPLDAFISRSELRDLEKLASVNVSKVSQQGLNAI 638
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 23 MAARMVNVDRPQDKGSGMEIVMRESPTAKDLKDILITLKFNKPP-PNITP 71
+A + N+DR + ME V+RE K++ I + N+PP P + P
Sbjct: 470 LAEQFANLDRDAKLLTPMEFVLREHALLKNVSADAIRVLCNRPPLPPLPP 519
>Z46793-2|CAA86771.1| 322|Caenorhabditis elegans Hypothetical
protein C56G7.3 protein.
Length = 322
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 8 KDDRLLLLD-YLISELMAARMVNVDRPQDKGSGMEIVMRESPTAKDLKDILITLKFNKPP 66
+ +R+ +LD + EL A + +D ++ GS V E+ + +DL +LI + P
Sbjct: 14 RKERMRVLDEWCEIELKGADALKMDVTREPGSPTVAVAPET-SLQDLYPLLIATSSSNAP 72
Query: 67 PNITP 71
P+ TP
Sbjct: 73 PSATP 77
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.312 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,437,215
Number of Sequences: 27539
Number of extensions: 224932
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 12,573,161
effective HSP length: 82
effective length of query: 257
effective length of database: 10,314,963
effective search space: 2650945491
effective search space used: 2650945491
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)
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