Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000113-TA|BGIBMGA000113-PA|undefined
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    26   1.6  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    26   2.1  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.8  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    24   8.5  

>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 72  GVLRSPWSCASKKSRRTCRKACKRALKDTCHELTCSK 108
           G  R+P+S  +  S+R   +A KRA      +LT S+
Sbjct: 10  GAKRAPFSSNTTSSQRVAAQAAKRASSGAFAQLTSSQ 46


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 17  TKTIDLMNQLFDEKYELEPDFGHDSLAEISTYLIPYDYVTEGRYSVDTSRFPLRKGVLRS 76
           TK I   N L+D   EL+ + G + +   S+    +     G  S     +P  K VL S
Sbjct: 159 TKIIMKSNWLYDALVELDNNMGENLIIHTSSQKSTFLLRCVGALSTTEIEYPNEKSVLES 218


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 125

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 6  KQLAFGEIYKRTKTIDLMNQLFDEKYELEP 35
          K + F +I   T T+D   ++ DE+ + +P
Sbjct: 20 KNVVFHDIDLATTTVDQFKKIIDERIQTDP 49


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 9   AFGEIYKRTKTIDLMNQLFDEKYELEPDFGH 39
           AFG +  R++  DL+ +  D K E++    H
Sbjct: 323 AFGGVKGRSQLPDLVKEYLDHKLEIDKYITH 353


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,005
Number of Sequences: 5004
Number of extensions: 22768
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 4
length of query: 127
length of database: 2,362,478
effective HSP length: 65
effective length of query: 62
effective length of database: 2,037,218
effective search space: 126307516
effective search space used: 126307516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)