Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000113-TA|BGIBMGA000113-PA|undefined
         (127 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.26 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.35 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.6  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
          protein MRJP6 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 15 KRTKTID-LMNQLFDEKYELEPDFGHDSLAEISTYLIPYDYVTEGRYSVD 63
          K +K ++  MN + + KY ++ DFG D   + +     YDY     + VD
Sbjct: 26 KSSKNLEHSMNVIHEWKY-IDYDFGSDEKRQAAIQSGEYDYTKNYPFDVD 74


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
          protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 18 KTIDLMNQLFDEKYELEPDFGHDSLAEISTYLIPYDYVTEGRYSVDTSR 66
          K  + MN + + KY L+ DFG D   + +     YD+     + VD  R
Sbjct: 30 KLANSMNVIHEWKY-LDYDFGSDERRQAAMQSGEYDHTKNYPFDVDQWR 77


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 74  LRSPWSCASKKSRRTCRKACK 94
           +R  + C  +KS+  C KA K
Sbjct: 411 VRPKYDCTLEKSQDDCLKAIK 431


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 74  LRSPWSCASKKSRRTCRKACK 94
           +R  + C  +KS+  C KA K
Sbjct: 411 VRPKYDCTLEKSQDDCLKAIK 431


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 74  LRSPWSCASKKSRRTCRKACK 94
           +R  + C  +KS+  C KA K
Sbjct: 411 VRPKYDCTLEKSQDDCLKAIK 431


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,228
Number of Sequences: 429
Number of extensions: 1506
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 140,377
effective HSP length: 51
effective length of query: 76
effective length of database: 118,498
effective search space:  9005848
effective search space used:  9005848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)