GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000113-TA|BGIBMGA000113-PA|undefined
         (127 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0432 + 3290546-3291911,3291972-3291988                           28   2.6  
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851...    27   4.6  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    27   6.1  
07_03_1700 - 28810239-28810870,28811304-28812594                       26   8.0  

>07_01_0432 + 3290546-3291911,3291972-3291988
          Length = 460

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 10  FGEIYKRTKTIDLMNQLFDEKYELEPDFGHDSLAEISTYLIPYDYVTEGRYSV---DTSR 66
           FG++  R  T+ L N++   + +    FGH    E S YL   D  T+GR SV   D   
Sbjct: 362 FGKV--RYDTLRLPNKVTAREADGSVKFGH---GEGSAYLFDPDIYTDGRISVQGIDAVL 416

Query: 67  FPLRKGVLRSPWSCASKKSRRTCRKA 92
           FP +        S +        RKA
Sbjct: 417 FPPKDTATGGEGSGSGSSGAAPARKA 442


>12_02_0992 +
           25083397-25083537,25084198-25084228,25084971-25085139,
           25085228-25085291,25085408-25085474,25086543-25086586,
           25086835-25086922,25087079-25087238,25087659-25087779,
           25087859-25087942,25088043-25088162,25088689-25088901,
           25088995-25089054,25089144-25089262,25089407-25089465,
           25089585-25089919
          Length = 624

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 68  PLRKGVLRSPWSCASKKSRRTCRKACKRALKDTCHELTCSKKFR 111
           PLR G    PW C   +  +   +    A   TCH   CS   +
Sbjct: 2   PLRSG--HGPWKCRRCRPNKRKGRLSLAAYLATCHSYHCSANIK 43


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 82  SKKSRRTCRKACKRALKDTCHELTCSKKFRKTFKSNCKSECNS 124
           S KS+R+CR+    +++ +C   T S   R T  S   S C S
Sbjct: 37  STKSKRSCRRGNDSSVEKSCRSTTVS---RPTSPSKEVSRCQS 76


>07_03_1700 - 28810239-28810870,28811304-28812594
          Length = 640

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 13  IYKRTKTIDLMNQLFDEKYELEPDFG-HDSLAEISTY-------LIPYDYVTEGRYS 61
           + KR K +    + F+++ EL    G H +L  +  Y       LI YDY+T G +S
Sbjct: 370 VVKRLKDVVAGKKEFEQQMELIGRLGKHANLVPLRAYYYSKDEKLIVYDYLTNGSFS 426


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,534,982
Number of Sequences: 37544
Number of extensions: 131237
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 4
length of query: 127
length of database: 14,793,348
effective HSP length: 74
effective length of query: 53
effective length of database: 12,015,092
effective search space: 636799876
effective search space used: 636799876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)