Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000113-TA|BGIBMGA000113-PA|undefined
(127 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.89
SB_43826| Best HMM Match : FH2 (HMM E-Value=0.00048) 28 2.7
SB_53560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 4.7
SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_54| Best HMM Match : Actin (HMM E-Value=0) 27 4.7
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 27 4.7
SB_22850| Best HMM Match : CXC (HMM E-Value=0.22) 27 4.7
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 26 8.3
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 26 8.3
SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40) 26 8.3
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.5 bits (63), Expect = 0.89
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 88 TCRKACKRALKDTCHELTCSKKFRKTFKSNCKSECNSR 125
TC CKR+ ++ C E C S+CK C R
Sbjct: 1173 TCSIMCKRSCEEGCPEQCCQNGCPVECLSSCKPHCPPR 1210
>SB_43826| Best HMM Match : FH2 (HMM E-Value=0.00048)
Length = 156
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 95 RALKDTCHELTCSKKF 110
+ L + CHEL CSKKF
Sbjct: 64 KGLLEACHELYCSKKF 79
>SB_53560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 84 KSRRTCRKACKRA----LKDTCHELTCSKKFRKTFKSNCKSE 121
K R++CRK + +K C L S+K R+TF+++ E
Sbjct: 138 KFRKSCRKMDREPSRLPVKRICRLLNMSRKIRRTFRNHIAKE 179
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 91 KACKRALKDTCHELTCSKKFRKTFKSNCKSECNS 124
K C+ +KD C C+KKF C +CN+
Sbjct: 1098 KNCETVVKDQCPVPNCAKKFD---GGKCNPKCNT 1128
>SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 30 KYELEPDFGHDSLAEISTYLIPY 52
K L GHD+LAE+ T L+P+
Sbjct: 48 KIMLPNALGHDNLAEVRTQLVPW 70
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 36 DFGHDSLAEISTYLIPYDYVTEGRYSVD 63
DF H+++A T+ +P V GR S+D
Sbjct: 1702 DFQHETVAVAPTHHVPLIIVNSGRESID 1729
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 28 DEKYELEPDFGHDSLAEISTYLIPYDYVTEGRYSVDTSRF 67
+E + L PDF +DSLA S +D + EG D S F
Sbjct: 108 NEGFCLPPDFFYDSLANDSPQPTSFDELFEGLPPGDDSDF 147
>SB_22850| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 418
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 87 RTCRKACKRALKDTCHELTCSKKFRKTFKSNCKSECNSR 125
+ C+ AC AL+ E + + K NC C +R
Sbjct: 339 KICQMACTYALERPMSEPAAPAQLLRNIKCNCGGHCETR 377
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 67 FPLRKGVLRSPWSCASKKSRRTCRKACKRALKDTCHELTCS 107
F + KGV + CA + T A +R L C +TC+
Sbjct: 1178 FQILKGVFITNTICAEQSVPSTADDAIRRKLAKLCLSVTCA 1218
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 26.2 bits (55), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 28 DEKYELEPDFGHDSLAEISTY 48
+E + L PDF HD LA++ +
Sbjct: 31 EESWRLPPDFFHDDLADLPQF 51
>SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 49 LIPYDYVTEGRYSVDTSRFPLRKGVLRSPWSCASKKSRRTCRKAC 93
L PYD T + S P+RK +++ SC K + ++ +AC
Sbjct: 101 LRPYDETTYHCVVIKASGLPVRKNIIKLNVSCEGKIT-QSSHEAC 144
>SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40)
Length = 430
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 67 FPLRKGVLRSPWSCASKKSRRTCRKACKRALKDTCHELTCS 107
F + KGV + CA + T A +R L C +TC+
Sbjct: 301 FQILKGVFITNTICAEQSVPSTADDAIRRKLAKLCLSVTCA 341
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 26.2 bits (55), Expect = 8.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 98 KDTCHELTCSKKFRKTFKSNCKSEC 122
+DTC + C K F + ++ C +C
Sbjct: 233 EDTCFQCRCIKGFAQCTRTECSRDC 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.133 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,418,541
Number of Sequences: 59808
Number of extensions: 175308
Number of successful extensions: 489
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 18
length of query: 127
length of database: 16,821,457
effective HSP length: 74
effective length of query: 53
effective length of database: 12,395,665
effective search space: 656970245
effective search space used: 656970245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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