GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000113-TA|BGIBMGA000113-PA|undefined
         (127 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    32   0.14 
AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical ...    32   0.14 
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z50177-3|CAA90544.1|  336|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z70037-6|CAC15861.1|  430|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AL132847-3|CAB63373.1|  778|Caenorhabditis elegans Hypothetical ...    26   7.2  
AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical...    26   7.2  
AL032651-4|CAC15867.1|  430|Caenorhabditis elegans Hypothetical ...    26   7.2  
AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical ...    26   7.2  
U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 85  SRRTCRKACKRALKDTCHELTCSKKFRKTFKSNCKSECNS 124
           S R C+ +C+      C  +TC    R+T ++ C   CNS
Sbjct: 172 SSRNCQNSCQNQCSSACTTMTC----RQTCQNTCLGSCNS 207


>AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.2 protein.
          Length = 421

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 37  FGHDSLAEISTYLIPYDYVTEGRYSVDTSRFPLRKGVLRSPWSCASKKSRRTCRKACK 94
           +G D L  + TY +    VT GR       F L  GV  SP +    + +RTC K C+
Sbjct: 207 YGGDPLKAL-TYWVNQGLVTGGRDGCRPYSFDLSCGVPCSPATFFEAEEKRTCMKRCQ 263


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 82  SKKSRRTCRKACKRALKDTCHELTCSKKFRKTFKSNC 118
           +KKS  T   A KR   D     TC + +   +KS C
Sbjct: 62  TKKSGETTEAAWKRCANDLSCATTCVENYYNRYKSQC 98


>Z50177-3|CAA90544.1|  336|Caenorhabditis elegans Hypothetical
           protein F46G10.4 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 50  IPYDYVTEGRYSVDTSRFPLRKGVLRSPWSCASKK 84
           +PY +  E  Y+ D S + +   V    WSC+ KK
Sbjct: 248 MPYHHPREIWYNDDFSNYVMCSDVNGEDWSCSDKK 282


>Z70037-6|CAC15861.1|  430|Caenorhabditis elegans Hypothetical
           protein T27D12.4 protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 79  SCASKKSRRTCRKACKRALKDTCHELTCSKKFRK 112
           S  ++K RR C    K+   D CHE+T  +K R+
Sbjct: 334 SYVNRKIRRPCVFCNKQHSVDECHEITNVEKRRE 367


>AL132847-3|CAB63373.1|  778|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 778

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 22  LMNQLFD-EKYELEPDFGHDSLAEISTYLIPYDY 54
           ++NQ F  E++ LE DF    L   S + +P DY
Sbjct: 580 IVNQQFAWERHSLERDFAQTQLIFNSDHFVPNDY 613


>AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical
           protein Y87G2A.20 protein.
          Length = 197

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 58  GRYSVDTSRFPLRKGVLRSPWSCASKKSRRTCRKACK---RALKDTCHELTCSKKFRKTF 114
           G+ +   ++   RK  ++  W+  ++K R+  +KA K   +  KD       SK  +K  
Sbjct: 27  GKANKTKTKATKRKAQMKKKWTKTAQKKRKERKKADKAKKKTKKDAAKRKKKSKDKKKKQ 86

Query: 115 KSNCKSE 121
           K+  K+E
Sbjct: 87  KAQKKAE 93


>AL032651-4|CAC15867.1|  430|Caenorhabditis elegans Hypothetical
           protein T27D12.4 protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 79  SCASKKSRRTCRKACKRALKDTCHELTCSKKFRK 112
           S  ++K RR C    K+   D CHE+T  +K R+
Sbjct: 334 SYVNRKIRRPCVFCNKQHSVDECHEITNVEKRRE 367


>AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical
           protein K02F6.2 protein.
          Length = 361

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 36  DFGHDSLAEISTYLIPYDYVTEGRYSVDTSRFPLRKGVLRSPWSCASKKSRRTCRKACKR 95
           D  H  L E     + +DY  +  +    + F  +  V++S W  AS K R+      K 
Sbjct: 106 DATHIVLPENENGSVTFDYTKDFDFYKMIAYFFKKTVVMKSSWLKASIKDRKNFVDDYKF 165

Query: 96  ALKDTCHELTCSKKFRK 112
            +++ C   T  K  R+
Sbjct: 166 QVEEVCMNSTSFKTCRQ 182


>U42842-2|AAA83592.3|  341|Caenorhabditis elegans Hypothetical
           protein EGAP2.1 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 84  KSRRTCRKACKRAL----KDTCHELTCSKKFRKTFKSNCKSECNSRFD 127
           K R+ CRK C R +    +  C+E  C  K ++   S+C  +  S F+
Sbjct: 90  KKRQQCRK-CDRMMHLRRRKNCYEWRCRTKDKRGDCSSCSIKFGSWFE 136


>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 82  SKKSRRTCRKACKRALKDTCHELTCSKKFRKTFKSNC 118
           +KK+  T   A KR   D     TC + +   +KS C
Sbjct: 62  TKKAGETTEAAWKRCADDLNCATTCVENYYNRYKSQC 98


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 18  KTID-LMNQLFDEKYELEPDFGHDS 41
           KT+  L  ++FD KY +E D+G+DS
Sbjct: 146 KTLSSLKTEIFD-KYSIESDYGYDS 169


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,642
Number of Sequences: 27539
Number of extensions: 129109
Number of successful extensions: 383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 17
length of query: 127
length of database: 12,573,161
effective HSP length: 73
effective length of query: 54
effective length of database: 10,562,814
effective search space: 570391956
effective search space used: 570391956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)