Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000113-TA|BGIBMGA000113-PA|undefined
(127 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo... 28 2.2
At4g28190.1 68417.m04041 expressed protein 27 2.9
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 27 5.1
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 27 5.1
At5g37440.1 68418.m04504 DNAJ heat shock N-terminal domain-conta... 26 6.8
At3g59230.1 68416.m06603 F-box family protein contains F-box dom... 26 6.8
At5g66450.1 68418.m08380 phosphatidic acid phosphatase-related /... 26 8.9
At3g18370.1 68416.m02336 C2 domain-containing protein contains P... 26 8.9
At1g75350.1 68414.m08752 ribosomal protein L31 family protein si... 26 8.9
>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
similarity to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 174
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 64 TSRFPLRKGVLRSPWSCA----SKKSRRTCRKACKRALKDTCHELTCSKKFRKTFKSNCK 119
T+ + K + PW C S+ R CR C L D H C K R S C
Sbjct: 46 TTNWGRPKPPMCKPWICKRSGPSEARMRCCRNQCVDVLSDPNHCRFCFKSCRFAL-SCCD 104
Query: 120 SEC 122
+C
Sbjct: 105 GDC 107
>At4g28190.1 68417.m04041 expressed protein
Length = 237
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 66 RFPLRKGVLRSPWSCASKKSRRTCR----KACKRALKDTCHELTCSKKFRKTFKSNCKSE 121
+ PL K VL ++ +SKK R+ R K C R C++ ++FR + C+
Sbjct: 103 KVPLSKTVLLKYYNESSKKCSRSNRSQGAKVCHRDEFVGCNDCGKERRFRLRSRDECRLH 162
Query: 122 CNSRFD 127
N+ D
Sbjct: 163 HNAMGD 168
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 80 CASKKSRRTCRKACKRALKDTCHELTCSKKFRKTFKS 116
C+ KS R C AC+ + + H+L C K FR T S
Sbjct: 75 CSRCKSVRYCSAACQTSDWKSGHKLKC-KGFRSTDSS 110
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 108 KKFRKTFKSNCKSECNSRF 126
KK K F SNC+ EC S F
Sbjct: 473 KKMEKDFDSNCERECFSCF 491
>At5g37440.1 68418.m04504 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 287
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 78 WSCASKKSRRTCRKACKRALK 98
W+C+S K+R C A + LK
Sbjct: 243 WNCSSTKARSNCGSAANQKLK 263
>At3g59230.1 68416.m06603 F-box family protein contains F-box domain
Pfam:PF00646
Length = 491
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 27 FDEKYELEPDFGHDSLAEISTYLIPY-DYVTEGRYSVDTSRFPLRKG 72
FD+ ++PD G+ EI T + + D V R + ++F L+ G
Sbjct: 56 FDDPVRMQPDMGNQEETEIHTSFMDFVDRVLALRGNSHVNKFSLKCG 102
>At5g66450.1 68418.m08380 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 286
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 54 YVTEGRYSVDTSRFPLRKGVLRSPWSCASKKS 85
Y+ R+ + +S FPL + R WS + KS
Sbjct: 28 YINSARFRISSSIFPLDRRRRRRIWSVSGFKS 59
>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 815
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 7 QLAFGEIYKRTKTIDLMNQLFDEKYELEPDFGHDSL 42
+L +G+I ++TK ++ ++++K+E E G + L
Sbjct: 507 KLQYGKIIQKTKIVNAAECVWNQKFEFEELAGEEYL 542
>At1g75350.1 68414.m08752 ribosomal protein L31 family protein
similar to SP:O46917 from [Guillardia theta]
Length = 144
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 74 LRSPWSCASKKSRRTCRKACKRALKDTCHELTCSKKFRKTFKSNCKSE 121
LR P A K +++ R++ ++ TC + +F + K C E
Sbjct: 21 LRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGE 68
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.133 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,356
Number of Sequences: 28952
Number of extensions: 117668
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 9
length of query: 127
length of database: 12,070,560
effective HSP length: 73
effective length of query: 54
effective length of database: 9,957,064
effective search space: 537681456
effective search space used: 537681456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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