Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000112-TA|BGIBMGA000112-PA|undefined
         (100 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          27   0.54 
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   0.95 
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   2.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    24   3.8  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    23   6.7  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    23   6.7  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    23   6.7  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    23   6.7  

>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 34  VGENKALTAKKGRFNPYTSTFQQCK 58
           VG+   LT++K RFNP  ++F   K
Sbjct: 141 VGQKLKLTSQKQRFNPMAASFNYSK 165


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 37  NKALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGK 87
           +KA +  K + N Y  TF  C    T+ + + SH      Y+   C++C K
Sbjct: 558 SKAKSESKSQGN-YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKK 607


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 51  TSTFQQCKICRTKVH 65
           T+  Q+C +CR KVH
Sbjct: 237 TAATQKCPVCRRKVH 251


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 49  PYTSTFQQCKICRTKVHQVGSHYCQAC 75
           PY  T++ C  C +K  Q+ SH   AC
Sbjct: 112 PYACTWEGCDECFSKHQQLRSH-ISAC 137


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 76  AYKKGICAMCGK 87
           A+  GICA CGK
Sbjct: 492 AFSHGICAACGK 503


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 55  QQCKICRTKVHQVGSHYCQACAYKKGICAM--CGKKI 89
           Q  +ICR     + S YC   A  K +C    C K+I
Sbjct: 418 QSTRICRIPPETMASLYCGPEADGKYVCLYNGCNKRI 454


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 65  HQVGSHYCQACAYKKGICAMCGKKILD 91
           H +G   C  CA++K I    G  ++D
Sbjct: 152 HSLGGAICAYCAFQKTIPNTSGLVVID 178


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 55  QQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYR 96
           Q+C  C   V ++       C      C +CG  +++   Y+
Sbjct: 366 QRCPTCDRVVERIDGCCHMNCLCGTHFCFLCGAYLMEQNPYK 407


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,329
Number of Sequences: 5004
Number of extensions: 15606
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 8
length of query: 100
length of database: 2,362,478
effective HSP length: 63
effective length of query: 37
effective length of database: 2,047,226
effective search space: 75747362
effective search space used: 75747362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)