GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000112-TA|BGIBMGA000112-PA|undefined
         (100 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   4.3  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   5.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    19   7.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   7.5  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    19   7.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    19   7.5  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    19   9.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    19   9.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 22  GARNTVESGGRVVGENKALTAKKGRFNPYTS 52
           G  +T    GR++G    L A  GR   + +
Sbjct: 271 GGTSTNHQRGRILGGCHILVATPGRLKDFVN 301


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 39  ALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYR 96
           A+ A   R+NPY             V Q G +  +  A    + A   ++ LD  N+R
Sbjct: 218 AMLAAYQRYNPYLQAASMLPKPTPLVPQQGFNMERLLAPSTEVSAPFFRQPLDLYNFR 275


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
          protein.
          Length = 279

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 47 FNPYTSTFQQCKI 59
          FN Y+S +++C +
Sbjct: 74 FNDYSSEYEKCDL 86


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
          protein.
          Length = 535

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 13 VITPDPWKAGARN 25
          V   DPW AG+ N
Sbjct: 48 VFVLDPWFAGSSN 60


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
          protein 18 protein.
          Length = 124

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 75 CAYKKGICAMCGKKILDT 92
          C   KG C   GKK+  T
Sbjct: 44 CLLDKGRCTPEGKKLKST 61


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory
          receptor candidate 41 protein.
          Length = 398

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 82 CAMCGKKILDTKN 94
          CA+C  KI  T N
Sbjct: 23 CAICVPKITSTNN 35


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory
          receptor candidate 40 protein.
          Length = 373

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 53 TFQQCKICRTKVHQVGSHYCQACAYKK 79
          TF+  K+  T +   G  +C + ++ K
Sbjct: 56 TFKSWKVLYTSLTSFGYLFCASLSFYK 82


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 14/40 (35%), Positives = 15/40 (37%)

Query: 11 GRVITPDPWKAGARNTVESGGRVVGENKALTAKKGRFNPY 50
          G V TP    A A +    GG   G   A      RF PY
Sbjct: 48 GVVTTPRWGCARASSATTMGGPRYGRAAAQGMPYPRFPPY 87


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.132    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,283
Number of Sequences: 317
Number of extensions: 934
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 100
length of database: 114,650
effective HSP length: 48
effective length of query: 52
effective length of database: 99,434
effective search space:  5170568
effective search space used:  5170568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)