Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000112-TA|BGIBMGA000112-PA|undefined
(100 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0604 - 5312558-5312622,5312826-5312917,5314128-5314245,531... 134 1e-32
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 30 0.36
05_07_0109 - 27738333-27738434,27739046-27739144,27739798-277399... 28 1.1
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 27 2.5
01_01_0028 + 209283-209563,209659-209890,210015-210160,210694-21... 27 2.5
02_05_1061 - 33825948-33825995,33826094-33826243,33827154-338273... 27 3.3
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 26 4.4
03_05_1048 - 29950860-29951396,29951810-29952676 26 5.8
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 26 5.8
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 25 7.7
01_03_0177 + 13470784-13471609,13472263-13472423,13472575-134727... 25 7.7
>08_01_0604 -
5312558-5312622,5312826-5312917,5314128-5314245,
5314423-5314438
Length = 96
Score = 134 bits (323), Expect = 1e-32
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 4/99 (4%)
Query: 1 MVCEKCEKKLGRVITPDPWKAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCKIC 60
MVC KCEKKLG+VI PD WK GA NT ESGGR + ENK L +KK R+ PY +T +C IC
Sbjct: 1 MVCAKCEKKLGKVIVPDKWKEGASNTNESGGRKINENK-LLSKKNRWTPYGNT--KCVIC 57
Query: 61 RTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSS 99
+ +VHQ + YC CAY KG+CAMCGK++LDTK Y+QS+
Sbjct: 58 KQQVHQ-DAKYCHTCAYSKGVCAMCGKQVLDTKLYKQSN 95
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 45 GRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMC 85
G++ P + K + V Q + C AC+ GICA C
Sbjct: 57 GKYKPIVEPAKCQKCGKRNVRQAYHNVCTACSKDLGICAKC 97
>05_07_0109 -
27738333-27738434,27739046-27739144,27739798-27739993,
27740083-27740308,27740585-27740770,27741029-27741305
Length = 361
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 13 VITPDPWKAGARNTVESGGR--VVGENKALTAKKGRFNPYTSTFQQCKICRT 62
V T D A R T GG+ ++G NK A +G+ NP + RT
Sbjct: 75 VDTDDMLAATMRRTASHGGKGDLLGPNKLANAARGQQNPAADRANPLSVSRT 126
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 50 YTSTFQQCKICRTKVHQV------GSHY---CQACAYKKGICAMCGKKILD 91
+T T +CK C VH + G Y C C++ KG +MC +D
Sbjct: 3 FTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMD 53
>01_01_0028 +
209283-209563,209659-209890,210015-210160,210694-210724,
211433-211579,212490-212639,212741-212788
Length = 344
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 57 CKICRTKVHQVG-----SH-YCQACAYKKGICAMCGKKI 89
C +C +HQ SH +C+AC + C +CG I
Sbjct: 72 CMVCHALLHQSSKCTPCSHKFCKACILRFKDCPLCGADI 110
>02_05_1061 -
33825948-33825995,33826094-33826243,33827154-33827300,
33827381-33827468,33828569-33828714,33828861-33829089,
33829193-33829482
Length = 365
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 57 CKICRTKVHQVG-----SH-YCQACAYKKGICAMCGKKI 89
C +C +HQ SH +C+AC + C +CG I
Sbjct: 75 CVVCHALLHQSSKCTPCSHKFCKACILRFKDCPLCGADI 113
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 50 YTSTFQQCKICRTKVHQV------GSHY---CQACAYKKGICAMCGKKILD 91
+T T +C C VH + G Y C C++ KGI +MC +D
Sbjct: 3 FTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMD 53
>03_05_1048 - 29950860-29951396,29951810-29952676
Length = 467
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 19 WKAGARNTVESGGRVVGENKALTAKK 44
W+ A V S G +VGENKA ++
Sbjct: 112 WRGRATGLVRSPGVLVGENKAAALRE 137
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 27 VESGGRVVGENKALTAKKGRFNPYT 51
+E+ G++VG++K L A G+ N T
Sbjct: 1527 LETAGKIVGQSKFLKALSGKVNDTT 1551
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 68 GSHYCQACAYKKGICAMCGKKILDTKN 94
G+ QA Y+KG C CG D K+
Sbjct: 82 GAKLFQANKYRKGACENCGAMTHDKKS 108
>01_03_0177 +
13470784-13471609,13472263-13472423,13472575-13472785,
13473092-13473161,13489257-13489410,13489532-13489777
Length = 555
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 4 EKCEKKLGRVITPDPWKAGARNTVESGGRVVGENKALTAKKGRFNPYTST 53
E+C L +I P G ++ GGR++G L +K F TST
Sbjct: 218 EQCRSCLAGIIAQMPKLFGDASSRPVGGRILGVRCNLRYEKDVFFKETST 267
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.132 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,970
Number of Sequences: 37544
Number of extensions: 113599
Number of successful extensions: 272
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 11
length of query: 100
length of database: 14,793,348
effective HSP length: 71
effective length of query: 29
effective length of database: 12,127,724
effective search space: 351703996
effective search space used: 351703996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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