GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000112-TA|BGIBMGA000112-PA|undefined
         (100 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical p...    97   3e-21
AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein...    29   0.75 
AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein...    29   0.75 
AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization...    29   0.75 
AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization...    29   0.75 
Z19154-1|CAA79552.1|  372|Caenorhabditis elegans Hypothetical pr...    28   0.99 
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    28   1.3  
U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical pr...    28   1.3  
L11247-8|AAY86263.1|  196|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    26   5.3  
AF025459-2|AAB70985.1|  252|Caenorhabditis elegans Mesodermal li...    26   5.3  
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    25   7.0  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    25   7.0  
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    25   7.0  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    25   7.0  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    25   7.0  
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp...    25   9.3  
AL132876-11|CAD21662.1|  813|Caenorhabditis elegans Hypothetical...    25   9.3  
AF039044-7|AAG24125.1|  125|Caenorhabditis elegans Hypothetical ...    25   9.3  
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    25   9.3  

>Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical
           protein C36B1.14 protein.
          Length = 99

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 5/102 (4%)

Query: 1   MVCEKCEKKLGRVITPDPW--KAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCK 58
           MVC  CEKKL +++  DP+  K   RN   SG + V     L   + +    T    +CK
Sbjct: 1   MVCGDCEKKLTKIVGVDPYRNKKVNRNADGSGPKTVTTKNRLIGVQKKA---TIVGAKCK 57

Query: 59  ICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSST 100
           +C+  +HQ GSHYC  CAY+KGICAMCGKKI +TK  RQS+T
Sbjct: 58  LCKMLIHQPGSHYCSTCAYQKGICAMCGKKIQNTKGLRQSTT 99


>AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 46  RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 89
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 46  RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 89
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization of
           germline protein1, isoform a protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 46  RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 89
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 330 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 373


>AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization of
           germline protein1, isoform b protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 46  RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 89
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>Z19154-1|CAA79552.1|  372|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 31  GRVVGENKALTAKKGRFNPYTSTFQQCKICRTKV--HQVGSHYCQACAYKKGICAMCGKK 88
           GR V  N A   K+    PY    Q C  C  ++  H    ++C   +  +  C  C  +
Sbjct: 239 GRFVQVNHAENNKRVEIKPYVMEEQYCDECEGRLCKHNYAPYFCGHASCLQYYCEGCWDR 298

Query: 89  ILDTKN 94
           +   KN
Sbjct: 299 MHIGKN 304


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 2   VCEKCEKKLGRVITPDPWKAGARNTVESGGRVVG 35
           + EKC K  G V+ P P K G     + GG V+G
Sbjct: 204 IIEKCAKTAG-VLLPGPVKFGLTAIAKLGGLVIG 236


>U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical
           protein C10G8.2 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 9/40 (22%)

Query: 55  QQC---KICRTKVHQVGSHYCQACAYKKGICAMCGKKILD 91
           QQC   K C  K  ++ SHYC     +KGIC  C  K L+
Sbjct: 96  QQCASHKDCNWKTSKINSHYCT----RKGIC--CQSKDLE 129


>L11247-8|AAY86263.1|  196|Caenorhabditis elegans Hypothetical
           protein F09G8.10 protein.
          Length = 196

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 63  KVHQVGSHYCQACAYKKGICAMC 85
           K+H+ G     ACAY K  C +C
Sbjct: 166 KIHKEGKEQQGACAYCKRECGLC 188


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 37  NKALTAKKGRFNPYTSTFQQCKICRTKVH 65
           +++ ++   R   Y  TFQ C IC+  VH
Sbjct: 131 SQSQSSSSDRKRSYPCTFQYCVICQKDVH 159


>AF025459-2|AAB70985.1|  252|Caenorhabditis elegans Mesodermal
           lineage specificationprotein 1 protein.
          Length = 252

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 36  ENKALTAKKGRFNPYTSTFQQCKICRTKVHQVG 68
           +N  +T+ K   NP+   F++C++   +++ VG
Sbjct: 190 QNHRITSLKIESNPFAKGFRECEVQGIEMNSVG 222


>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 37   NKALTAKKGRFNPYTSTFQQCKICRTKVHQV 67
            +KAL AK G+         +C+IC+    +V
Sbjct: 1277 SKALAAKSGKMEALKQLLIECEICKNPDEEV 1307


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 37   NKALTAKKGRFNPYTSTFQQCKICRTKVHQV 67
            +KAL AK G+         +C+IC+    +V
Sbjct: 1277 SKALAAKSGKMEALKQLLIECEICKNPDEEV 1307


>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical protein
            C54G7.4 protein.
          Length = 1199

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 57   CKICRTKVHQVGSHYCQACAYKKGICAMCGKKILD 91
            C +C  K+       C  C  K  +C   G+ ILD
Sbjct: 1130 CSVCDAKIDPYDLQ-CSECQTKFPVCIASGRLILD 1163


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform a protein.
          Length = 1280

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 45  GRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMC 85
           G+ +PY     +C  C         H+C+AC   + +C  C
Sbjct: 532 GKTSPYWIPDSECPNCMLFTIITRRHHCRACG--RVLCGSC 570


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
           protein protein.
          Length = 1280

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 45  GRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMC 85
           G+ +PY     +C  C         H+C+AC   + +C  C
Sbjct: 532 GKTSPYWIPDSECPNCMLFTIITRRHHCRACG--RVLCGSC 570


>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
            transporting ATPase protein.
          Length = 1121

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 19   WKAGARNTVESGGRVVGENKALTAK 43
            WK GA+N   S G   GE + L  K
Sbjct: 989  WKIGAKNFTTSQGLTFGEQQQLFIK 1013


>AL132876-11|CAD21662.1|  813|Caenorhabditis elegans Hypothetical
           protein Y105E8A.12 protein.
          Length = 813

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 19  WKAGARNTVESGGRVVGENKALTAK 43
           WK GA+N   S G   GE + L  K
Sbjct: 681 WKIGAKNFTTSQGLTFGEQQQLFIK 705


>AF039044-7|AAG24125.1|  125|Caenorhabditis elegans Hypothetical
          protein F48G7.9 protein.
          Length = 125

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 62 TKVHQVGSHYCQACA-YKKGICAMCGKKI--LDTKNYR 96
          +KVH+V  H  +A A  +   CA C K I  L  + YR
Sbjct: 19 SKVHEVAGHKFRAAALLQPTCCAFCSKIIYGLGKQGYR 56


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
          protein Y54G2A.40 protein.
          Length = 636

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 72 CQACAYKKGICAMCGKKILDTKNY 95
          C  C  K   C +C K ++ T+NY
Sbjct: 38 CTQCFNKYKNCPICAKPLVRTENY 61


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.132    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,280
Number of Sequences: 27539
Number of extensions: 99429
Number of successful extensions: 220
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 20
length of query: 100
length of database: 12,573,161
effective HSP length: 70
effective length of query: 30
effective length of database: 10,645,431
effective search space: 319362930
effective search space used: 319362930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)