Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000112-TA|BGIBMGA000112-PA|undefined
(100 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61780.1 68414.m06967 postsynaptic protein-related similar to... 138 8e-34
At5g48090.1 68418.m05941 expressed protein ; expression supporte... 32 0.076
At3g02220.1 68416.m00203 expressed protein 29 0.41
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 29 0.41
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 29 0.54
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 29 0.54
At5g04410.1 68418.m00433 no apical meristem (NAM) family protein... 27 1.6
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00... 27 2.2
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 27 2.9
At1g17850.1 68414.m02209 expressed protein 27 2.9
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 26 3.8
At3g45950.1 68416.m04972 splicing factor-related similar to step... 26 3.8
At3g28720.1 68416.m03586 expressed protein 26 3.8
At2g27300.1 68415.m03281 no apical meristem (NAM) family protein... 26 3.8
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ... 26 3.8
At1g69490.1 68414.m07985 no apical meristem (NAM) family protein... 26 3.8
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ... 26 5.0
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 26 5.0
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ... 26 5.0
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 25 6.6
At5g48160.1 68418.m05949 tropomyosin-related contains weak simil... 25 6.6
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 25 6.6
At2g46770.1 68415.m05835 no apical meristem (NAM) family protein... 25 6.6
At2g25305.1 68415.m03027 hypothetical protein 25 6.6
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot... 25 6.6
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 25 8.7
At3g44290.1 68416.m04756 no apical meristem (NAM) family protein... 25 8.7
At3g07780.1 68416.m00949 expressed protein 25 8.7
At2g17740.1 68415.m02055 DC1 domain-containing protein 25 8.7
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 25 8.7
>At1g61780.1 68414.m06967 postsynaptic protein-related similar to
postsynaptic protein CRIPT GI:3098551 from [Rattus
norvegicus]
Length = 98
Score = 138 bits (333), Expect = 8e-34
Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Query: 1 MVCEKCEKKLGRVITPDPWKAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCKIC 60
MVC+KCEKKL +VI PD WK GARN E GGR + ENK L +KK R++PY++ +C IC
Sbjct: 1 MVCDKCEKKLSKVIVPDKWKDGARNVTEGGGRKINENK-LLSKKNRWSPYSTCTTKCMIC 59
Query: 61 RTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSS 99
+ +VHQ G YC CAY KG+CAMCGK++LDTK Y+QS+
Sbjct: 60 KQQVHQDGK-YCHTCAYSKGVCAMCGKQVLDTKMYKQSN 97
>At5g48090.1 68418.m05941 expressed protein ; expression supported
by MPSS
Length = 636
Score = 31.9 bits (69), Expect = 0.076
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 61 RTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQ 97
+T++ +G++ C C YK+ C CG+ +N+ Q
Sbjct: 73 KTQIQALGTYLCNNCLYKQHQCYACGELGSSDENFSQ 109
>At3g02220.1 68416.m00203 expressed protein
Length = 227
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 36 ENKALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 89
E A K G++ T + K + V Q C CA ++ +CA C + +
Sbjct: 48 EQIAWKRKYGKYKTLTEATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCQSV 101
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 29.5 bits (63), Expect = 0.41
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 76 AYKKGICAMCGKKILDTKNYRQSS 99
AY G C++CGKKI D Y S+
Sbjct: 190 AYTDGNCSLCGKKIFDEMFYHCSA 213
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 29.1 bits (62), Expect = 0.54
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 38 KALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAM 84
K LTA RF Y+ +C++C +K+ ++C +C + G+C +
Sbjct: 119 KLLTA---RFPDYSDG--KCRLCGSKIDDRLFYHCSSCNFTLGLCCV 160
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD
finger protein-related contains Pfam profiles PF03107:
DC1 domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 29.1 bits (62), Expect = 0.54
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 51 TSTFQQCKICRTKVHQVGSHYCQAC-AYKKGICA 83
T F+ C +C K H + +YC C Y +CA
Sbjct: 52 TKPFEHCILCSRKAHNI-IYYCDVCDIYMHVLCA 84
>At5g04410.1 68418.m00433 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein;
supporting cDNA gi|6456750|gb|AF201456.1|AF201456
Length = 567
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 9 KLGRVITPDPWKA-GARNTVESGGRVVGENKALTAKKGR 46
K R WK G + +G RVVG K L KGR
Sbjct: 82 KTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGR 120
>At3g26000.1 68416.m03239 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 453
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 68 GSHYCQACAYKKGICAMCGKKILDTK 93
GS C+AC+ C CG+ I+DT+
Sbjct: 405 GSEECRACSLCIQRCYHCGRCIIDTE 430
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 11 GRVITPDPWKAGARNT--VESGGRVVGENKALTAKKGRFNPYTSTFQQCKICRTKVHQVG 68
GRV WK + N +ES G EN N FQ C+IC + +
Sbjct: 656 GRVRKMAKWKPDSDNESDLESEGGFPSENMYSADSADDSNDSDDEFQICQICSGEDERKK 715
Query: 69 SHYCQAC 75
+C C
Sbjct: 716 LLHCSEC 722
>At1g17850.1 68414.m02209 expressed protein
Length = 423
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 32 RVVGENKALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKILD 91
+ VG+N A + P ++F +C +C ++V ++ C + + C + ++D
Sbjct: 316 KAVGDNVVDEAGRTPQTPVDTSFARCYLCNSQVQELRHRNCANLDCNR-LFLCCAECVVD 374
Query: 92 TK 93
K
Sbjct: 375 LK 376
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 65 HQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSS 99
H + H Q Y G C +C +KI D Y SS
Sbjct: 184 HPLKLHTGQRPDYSDGACRLCARKIDDRYFYHCSS 218
>At3g45950.1 68416.m04972 splicing factor-related similar to step II
splicing factor SLU7 [Homo sapiens] GI:4249705
Length = 385
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 59 ICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTK 93
+ T + G+ QA Y+KG C CG D K
Sbjct: 73 VSTTSYYDRGAKTYQAEKYRKGACQNCGAMTHDVK 107
>At3g28720.1 68416.m03586 expressed protein
Length = 687
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 28 ESGGRVVGENKALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGK 87
ESGG ++GE K F Y+ +++C IC V + + Y + +
Sbjct: 347 ESGGLLLGEQKL------SFKSYSVNYRECSICSFAVSRGMNSYTSRFLFDN--YTLIVS 398
Query: 88 KILDTKNYRQSST 100
+ LD+K+ ++ T
Sbjct: 399 EYLDSKHMHRALT 411
>At2g27300.1 68415.m03281 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 335
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 19 WKA-GARNTVESGGRVVGENKALTAKKGR 46
WKA G +V+SG +VVG + L GR
Sbjct: 96 WKATGKERSVKSGNQVVGTKRTLVFHIGR 124
>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 772
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 56 QCKICRTKVHQVGSH-YCQACAYK-KGICAMCGKKI 89
+C ICRTK+ GS C+ C+++ CA G+ +
Sbjct: 419 KCNICRTKIR--GSPCKCETCSFQAHSFCAELGRPL 452
>At1g69490.1 68414.m07985 no apical meristem (NAM) family protein
similar to N-term half of NAC domain protein NAM
[Arabidopsis thaliana] GI:4325282
Length = 268
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 19 WKA-GARNTVESGGRVVGENKALTAKKGR 46
WKA G + SG VG KAL KGR
Sbjct: 90 WKATGTDKAIHSGSSNVGVKKALVFYKGR 118
>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 668
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 64 VHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSS 99
+H + H Q Y G C +C +KI D Y S+
Sbjct: 184 LHPLKLHIGQPPDYSDGKCRLCAQKICDRLFYHCSA 219
Score = 25.4 bits (53), Expect = 6.6
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 56 QCKICRTKVHQVGSHYCQACAYKKGICAM 84
+C++C K+ ++C AC + +C +
Sbjct: 201 KCRLCAQKICDRLFYHCSACNFSLDMCCL 229
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 50 YTSTFQQCKICRTKVHQVGSHYCQACAYKKGI--CAMCGKKILDTKNY 95
+T T Q+C+ C V+ V +Y K C+ C K L NY
Sbjct: 3 FTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHC-KSRLQLSNY 49
>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 649
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 47 FNPYTST--FQQCKICRTKVHQVGSHYCQAC-AYKKGICA 83
F Y+S F+ C +CR KV+ + +YC C Y +CA
Sbjct: 181 FQLYSSKKRFKYCIMCRKKVNGL-VYYCALCDMYMHTLCA 219
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 53 TFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKIL 90
T ++C C + +V +YC AC Y I + ++L
Sbjct: 502 TTRECYCCDKDLEEV-FYYCSACDYAMNIACIKRTRVL 538
>At5g48160.1 68418.m05949 tropomyosin-related contains weak
similarity to Tropomyosin, muscle (Allergen Ani s 3).
(Swiss-Prot:Q9NAS5) [Anisakis simplex]
Length = 574
Score = 25.4 bits (53), Expect = 6.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 71 YCQACAYKKGICAMC 85
YC C +KG C +C
Sbjct: 213 YCDICTNRKGFCNLC 227
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 77 YKKGICAMCGKKILDTKNYRQSS 99
Y G C +CG+KI D Y SS
Sbjct: 205 YSDGKCRLCGRKIDDKLFYHCSS 227
>At2g46770.1 68415.m05835 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 365
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 19 WKAGARNTV-ESGGRVVGENKALTAKKGR 46
WKA R+ + S GR +G K L KGR
Sbjct: 100 WKATGRDKIIYSNGRRIGMRKTLVFYKGR 128
>At2g25305.1 68415.m03027 hypothetical protein
Length = 83
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 64 VHQVGSHYCQACAYKKGICAM 84
++Q S YC A +YK G+C +
Sbjct: 47 MNQDCSKYCAALSYKHGVCIL 67
>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
and PF00569: Zinc finger, ZZ type; identical to cDNA
p300/CBP acetyltransferase-related protein 2
GI:12597460
Length = 1691
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 29 SGGRVVGENKALTAKKGRFNPYTSTFQQCK 58
SGG ++G+N+ T + NP T C+
Sbjct: 590 SGGSIIGQNRVSTTSES-LNPQNPTATTCR 618
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 53 TFQQCKICRTKVHQVGSHYCQACAYKKG-ICAM 84
TFQ+C C T ++ + H C C +CA+
Sbjct: 207 TFQKCFCCETSLYDMFYH-CATCDLSMSPVCAL 238
>At3g44290.1 68416.m04756 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
NAC2 - Arabidopsis thaliana, EMBL:AF201456
Length = 335
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 19 WKA-GARNTVESGGRVVGENKALTAKKGR 46
WKA G V+SG V+G + L GR
Sbjct: 96 WKATGKERNVKSGSEVIGTKRTLVFHIGR 124
>At3g07780.1 68416.m00949 expressed protein
Length = 566
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 72 CQACAYKKGICAMC 85
C+ CA +KG C +C
Sbjct: 213 CEICANRKGFCNLC 226
>At2g17740.1 68415.m02055 DC1 domain-containing protein
Length = 248
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 57 CKIC-RTKVHQVGSHYCQACAY 77
C +C T H + +YCQ C Y
Sbjct: 145 CDVCDETMPHNLWLYYCQKCDY 166
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
contains Pfam PF00569: Zinc finger, ZZ type domain;
identical to histone acetyltransferase HAC4 (GI:14794966)
{Arabidopsis thaliana}
Length = 1456
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 48 NPYTSTFQQ-CKICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYRQSST 100
NP F C IC+ +V +C+ C +C+ C K D+ N+ T
Sbjct: 1276 NPTAPAFATVCTICQQEVENSQGWHCEVCP-GYDVCSACYSK--DSINHSHKLT 1326
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.132 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,269
Number of Sequences: 28952
Number of extensions: 92523
Number of successful extensions: 233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 36
length of query: 100
length of database: 12,070,560
effective HSP length: 70
effective length of query: 30
effective length of database: 10,043,920
effective search space: 301317600
effective search space used: 301317600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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