GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000111-TA|BGIBMGA000111-PA|undefined
         (305 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       28   0.099
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.8  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   6.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   6.5  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    22   6.5  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    22   6.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 116 SSPGHDDPGDQSPGDTGHTDRTDRERLQPEHHDHQEPTTI-TDEHQSQPMSKDDEKPYKN 174
           S PG    G+Q     G   + D  +++ E  D +  TT+ ++    Q  +K +E    N
Sbjct: 404 SKPGCSYTGEQKSRRKGPAFKVDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNN 463

Query: 175 QND 177
            N+
Sbjct: 464 NNN 466



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 122 DPGDQSPGDTGHTDRTDRERLQPEHHDHQEPTTITDEHQSQP 163
           +P D+   D+G T  +D     P     Q+        Q+QP
Sbjct: 46  EPMDEDKNDSGVTSGSDFHSSSPSSDTSQDLQHSYQSPQTQP 87


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 260 VNYQPEQNYEQSYENTAEAPQEQYYPESNDTNPSDAPTKMAEEHQ 304
           VN + E    QSY  T           S  T PS + + +A +H+
Sbjct: 236 VNIKKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHE 280


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 248 QYSEEQYNNIAEV---NYQPEQNYEQSYENTAEAPQEQYYPESNDTNPSDAPTKMA 300
           + S  Q+ N A +   N+  E+   + YEN    P   Y P   +    +AP  M+
Sbjct: 9   EMSYSQFENQAVLQSYNFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPPYMS 64


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 139 RERLQPEHHDHQEPTTITDEHQSQPMSKDDEKPYKNQND 177
           R RL+ E+    EP   TD+     +S  D++  K++ D
Sbjct: 139 RRRLKKENKMTWEPKNKTDDDDDALVSDSDDRE-KDEED 176


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 125 DQSPGDTGHTDRTDRERLQPEHHDHQEPTTITDEHQSQ 162
           D +P   G T+R  R     E +  ++P   T EH +Q
Sbjct: 9   DAAPVRYGPTERWQRLSFDDEDNLPKDPRQWTREHVAQ 46


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 125 DQSPGDTGHTDRTDRERLQPEHHDHQEPTTITDEHQSQ 162
           D +P   G T+R  R     E +  ++P   T EH +Q
Sbjct: 9   DAAPVRYGPTERWQRLSFDDEDNLPKDPRQWTREHVAQ 46


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 134 TDRTDRERLQPEHHDHQEPTTITDEHQSQPMSKDDEKPYKN 174
           +D  DRE    +H+      T+       P  +D    +KN
Sbjct: 4   SDHFDRESPNIDHNSCSSDDTVLSVGNENPPPEDTPLSFKN 44


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 86  VMACVQYNLVDFVAHPTHY 104
           ++ C+ Y    F+  PTH+
Sbjct: 294 ILLCIYYFCRAFIIFPTHF 312


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 250 SEEQYNNIAEV---NYQPEQNYEQSYENTAEAPQEQYYPESNDTNPSDAPTKMA 300
           S  Q+ N A +   N+  E+   + YEN    P   Y P   +    +AP  M+
Sbjct: 2   SYSQFENQAVLQSYNFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPPYMS 55


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.125    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,499
Number of Sequences: 317
Number of extensions: 3561
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 10
length of query: 305
length of database: 114,650
effective HSP length: 57
effective length of query: 248
effective length of database: 96,581
effective search space: 23952088
effective search space used: 23952088
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 43 (21.4 bits)