GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000111-TA|BGIBMGA000111-PA|undefined
         (305 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.090
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.16 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.3 bits (60), Expect = 0.090
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 204  QEQNYEATEMQYQPEYQNNYEEPTXXXXXXXXXXXXXXXXDPNAQYSEEQYNNIAEVNYQ 263
            Q+Q  +  ++ + P+  N Y  PT                D ++Q +++Q     +   Q
Sbjct: 1458 QQQQQQQQQLNHYPDLHNLYAVPT----DKKSACDSKLIVDHSSQKTQQQQPQQQQQQQQ 1513

Query: 264  PEQNYEQSYENTAEAPQEQ 282
             +Q  +QS +   + PQ Q
Sbjct: 1514 QQQPQQQSQQPQQQQPQPQ 1532



 Score = 25.0 bits (52), Expect = 0.83
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 146 HHDHQEPTTITDEHQSQPMSKDDEKPYKNQNDAPIKSERPMDVE 189
           HH H + T + D H  +P  +  ++  + Q     +  RP +++
Sbjct: 147 HHHHLQSTAVQDHH--RPYQQQQQQQQRQQQRQEERRLRPDEIK 188



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 251  EEQYNNIAEVNYQPEQNYEQSYENTAEAPQEQ 282
            +EQ  N A V  Q +Q  +Q  +   +  Q+Q
Sbjct: 1199 QEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQ 1230



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 248  QYSEEQYNNIAEVNYQPEQNYEQSYENTAEAPQEQYYPE 286
            Q  +     +     QP+Q  +Q  +   +  Q  +YP+
Sbjct: 1434 QQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPD 1472



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 139  RERLQPEHHDHQEPTTITDEHQSQPMSKDDEKPYKNQNDAPIKSERPMDVEHKEQTYQED 198
            +++ Q +    Q+     D H    +  D +    ++      S++    + ++Q  Q+ 
Sbjct: 1454 QQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQQQ 1513

Query: 199  ANFIGQEQNYEATEMQYQPEYQNNYEE 225
                 Q+Q+ +  + Q QP+ Q   ++
Sbjct: 1514 QQQ-PQQQSQQPQQQQPQPQQQQQQQQ 1539



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 258 AEVNYQPEQNYEQSYENTAEAPQEQYYPESNDTNP 292
           A+   QP+Q  +Q  +   +  Q+Q   +     P
Sbjct: 824 AQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGP 858


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 244 DPNAQYSEEQYNNIAEVNYQPEQNY---EQSYENTAEAPQEQYYP 285
           D N  Y +  Y N    N + ++ +   E + E  A+ P+EQY P
Sbjct: 111 DDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIP 155


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 100 HPTHYTPADRSVPFIASSPGHDDPGDQSPGDTGHTDRTDRERLQPEHHDHQEPTTITDEH 159
           HP  + P+    P   SSP H   G+ + G T            P HH H +  ++   H
Sbjct: 317 HPHQHHPSQYH-PHRGSSPHHQH-GNHTMGPTMGP---------PHHHHHHQTQSLQHLH 365

Query: 160 QSQP 163
             QP
Sbjct: 366 YRQP 369


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 138 DRERLQPEHHDHQEPTTITDEHQSQPMSKDDEKPYKNQNDAPIKSERPMDVEHKEQTYQE 197
           ++E+   E    +  +   +  Q    +K + + Y+  +    ++    +   KE     
Sbjct: 25  EKEKFLEERTSRKRYSRSREREQKLYKNKREYRKYRETSKERSRNRTERE-RSKEPKIIS 83

Query: 198 DANFIGQEQNYEATEMQYQPEYQNNYEE 225
           + N +    NY      Y   Y  NY++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNTNYKK 111


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 172 YKNQNDAPIKSE-RPMDVEHKEQTYQEDANFIGQEQNYEATEMQYQPE 218
           Y+N ND  I  E R ++ E   + Y+   N+I +E      E+  +P+
Sbjct: 431 YRN-NDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPK 477


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 143 QPEHHDHQEPTTITDEHQSQPMSKDDEKPYKNQNDAPIKSERPMDVEHKEQTYQEDANFI 202
           Q  HH H               + D+EK Y+   +  I   R +  ++  + +    +F+
Sbjct: 71  QSHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKIL--RELQTDYDRRLHDNSPSFL 128

Query: 203 GQEQNYEATEMQYQPEYQ 220
                 +   +   P  Q
Sbjct: 129 SDHSRDQEQNLYLTPSPQ 146


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.125    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,378
Number of Sequences: 429
Number of extensions: 5665
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 13
length of query: 305
length of database: 140,377
effective HSP length: 57
effective length of query: 248
effective length of database: 115,924
effective search space: 28749152
effective search space used: 28749152
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 44 (21.8 bits)