Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000110-TA|BGIBMGA000110-PA|IPR009053|Prefoldin,
IPR010978|tRNA-binding arm
         (757 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   2.5  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    25   2.5  
U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.           24   4.4  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   7.7  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 346 LDDLHHDLAAQYDTVARLQADLSQAHAE 373
           L+D++ DLA  + + AR  A LS   AE
Sbjct: 412 LEDINPDLAEAFSSYARKNARLSFGRAE 439


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 346 LDDLHHDLAAQYDTVARLQADLSQAHAE 373
           L+D++ DLA  + + AR  A LS   AE
Sbjct: 237 LEDINPDLAEAFSSYARKNARLSFGRAE 264


>U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.
          Length = 45

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 396 KHETNRLNSEIQSLRQRLDRADADLVHSRRENLRLSE 432
           +   N LN     LRQ +   DAD   S+ E L++++
Sbjct: 7   RRRMNGLNEAFDRLRQVIPSLDADHKLSKFETLQMAQ 43


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 594 VDISVKLIPKSRRRDKKRTAQLDEVALDDKGVKNSVSMEVSEG 636
           + I+  L   S+   K     LDE+   D+ +KN V+  + +G
Sbjct: 12  IAIASSLAENSKYTTKYDNVDLDEIIKSDRLLKNYVNCLLEKG 54


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.127    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,990
Number of Sequences: 317
Number of extensions: 5743
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 757
length of database: 114,650
effective HSP length: 62
effective length of query: 695
effective length of database: 94,996
effective search space: 66022220
effective search space used: 66022220
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 47 (23.0 bits)