GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000109-TA|BGIBMGA000109-PA|IPR000219|DH
         (1676 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.20 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   2.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   2.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   3.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   3.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   5.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   5.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   5.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   5.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   5.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   5.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   5.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   5.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   7.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 1394 KIEHVIDGDVFRDSAVYSDQEEVDEAKSEPWIKDKKPI--NKIITRVESVQRK 1444
            KIE  +    F   A ++   E +  K+  W+KD  PI  N+ + R+ESV+++
Sbjct: 331  KIEPQVQTIDFGRPATFTCNFEGNPIKTISWLKDGHPIDHNEAVLRIESVRKE 383


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 1584 PSLQSEAKTSNKSVLERRLEIERLSKTQMTPIKIPVPPIPAHRSFDRSISERMKNRTTGE 1643
            PS  +   + + SV    +    L+  +   +K+P PP P H+     +          +
Sbjct: 702  PSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV-----GTNPHD 756

Query: 1644 IEKDIPVNKINYE--RTDSDDVKGSWVKQVVN 1673
            I   + VN++  +  R DS D  G   + +++
Sbjct: 757  INNPLSVNQLTGQCVRNDSSDTNGKETRSIIS 788


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 1584 PSLQSEAKTSNKSVLERRLEIERLSKTQMTPIKIPVPPIPAHRSFDRSISERMKNRTTGE 1643
            PS  +   + + SV    +    L+  +   +K+P PP P H+     +          +
Sbjct: 594  PSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV-----GTNPHD 648

Query: 1644 IEKDIPVNKINYE--RTDSDDVKGSWVKQVVN 1673
            I   + VN++  +  R DS D  G   + +++
Sbjct: 649  INNPLSVNQLTGQCVRNDSSDTNGKETRSIIS 680


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/85 (16%), Positives = 37/85 (43%)

Query: 740 EDNKFKLVKQNSERNDTKIDEDDAISQQIPEPDQVETKEIEEDHIYETLRIDSRFEDALH 799
           +D+   LV  + +R   + D+ D          +   K++++D + +  R D    + +H
Sbjct: 157 DDDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLDDDDMNDDDRKDDLLGNNMH 216

Query: 800 NVDNKSKSIHHQHLNRQKRLPSPPA 824
           ++   +  +  +     + +P PP+
Sbjct: 217 HILGNTFGLKPEMKTSDRGVPLPPS 241


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthologue
            protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 1397 HVIDGDVFRDSAVYSDQEEVDEAKSEPWIKDKKPINKIITRVESVQRKSSLQRINLTKTE 1456
            H   G++F +      Q+   + K E   +  K  +  +    S ++KSS+Q       +
Sbjct: 217  HPDSGNMFENGCYLRRQKRFKDEKKELIRQTHKSPSHSVDNSNSSEKKSSIQH----GDD 272

Query: 1457 TIQTVNKDRNPEQNSTTPL 1475
              +T + D+NPE    T L
Sbjct: 273  AHKTHHLDKNPENTLGTML 291


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 255 CFESGARGRLAKANRKYTTPSARSTRPERC 284
           C+   AR + +     Y  P+A ST P  C
Sbjct: 13  CYGQQARDQQSSPGTDYYNPNANSTYPPAC 42


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 623 EDIDEETYKKLIEKTDSFKKNELE 646
           ED     Y  LI+K DSF K +LE
Sbjct: 299 EDFKAIWYSILIKKADSFCKKKLE 322


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,465
Number of Sequences: 317
Number of extensions: 14808
Number of successful extensions: 43
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 14
length of query: 1676
length of database: 114,650
effective HSP length: 66
effective length of query: 1610
effective length of database: 93,728
effective search space: 150902080
effective search space used: 150902080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)