GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000108-TA|BGIBMGA000108-PA|undefined
         (420 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.76 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   5.4  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 263 SSKETSPMKSNPKTSTPEGSPAKV 286
           SS  TSP  + P  +T  GSPA V
Sbjct: 24  SSGMTSPAAAPPPATTSSGSPASV 47


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 119 PKHEPTFDSLSPNVKRIISSATEASALKFQKITTN 153
           PK+ PTF  LS +++ ++ +  +   ++  + T N
Sbjct: 735 PKNRPTFTELSKSLEGLLENVAQYLQIENVEQTLN 769


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.126    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,742
Number of Sequences: 317
Number of extensions: 3686
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 420
length of database: 114,650
effective HSP length: 59
effective length of query: 361
effective length of database: 95,947
effective search space: 34636867
effective search space used: 34636867
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 44 (21.8 bits)