Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000108-TA|BGIBMGA000108-PA|undefined
(420 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 37 0.029
At5g46020.1 68418.m05659 expressed protein 33 0.47
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 32 0.82
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 32 0.82
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 31 1.4
At2g23360.1 68415.m02790 transport protein-related contains Pfam... 31 1.9
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein... 31 1.9
At1g17830.1 68414.m02207 expressed protein 31 1.9
At5g26040.2 68418.m03099 histone deacetylase family protein (HDA... 30 2.5
At5g26040.1 68418.m03098 histone deacetylase family protein (HDA... 30 2.5
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 30 2.5
At2g47860.2 68415.m05974 phototropic-responsive NPH3 family prot... 30 2.5
At2g47860.1 68415.m05973 phototropic-responsive NPH3 family prot... 30 2.5
At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26... 30 2.5
At2g22795.1 68415.m02704 expressed protein 30 2.5
At1g77310.1 68414.m09004 wound-responsive protein, putative simi... 30 2.5
At1g17690.1 68414.m02190 expressed protein 30 2.5
At1g79150.1 68414.m09229 expressed protein ; expression supporte... 30 3.3
At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote... 30 3.3
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P... 29 4.4
At2g38910.1 68415.m04783 calcium-dependent protein kinase, putat... 29 5.8
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 29 5.8
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 29 5.8
At1g15420.1 68414.m01850 expressed protein 29 5.8
At1g05080.1 68414.m00510 F-box family protein contains F-box dom... 29 5.8
At5g64540.1 68418.m08111 hypothetical protein 29 7.7
At3g17340.1 68416.m02216 importin-related contains Pfam profile ... 29 7.7
At3g13360.1 68416.m01681 expressed protein 29 7.7
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 29 7.7
At2g24490.1 68415.m02926 replication protein, putative similar t... 29 7.7
At1g08820.1 68414.m00982 vesicle-associated membrane family prot... 29 7.7
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 36.7 bits (81), Expect = 0.029
Identities = 58/275 (21%), Positives = 106/275 (38%), Gaps = 21/275 (7%)
Query: 23 KTLKPEVNSETAKDARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATINKSSLYT 82
K +KP S A PP P+S T S + K++D + V+ + + S T
Sbjct: 370 KNVKPRPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQVPVEANVVPVPDS---T 426
Query: 83 LRGKSDKIGAIDTDKCDRAISETVLIKDKPQRTLKDPKHEPT--FDSLSPNVKRIISSAT 140
++ ++ +K +R +S ++ + P T DSLSP S T
Sbjct: 427 SNVPVVEVKQVE-EKKERPLSPYARYENLKPPSSPSPTASSTRKSDSLSPGP---TDSDT 482
Query: 141 EASALKFQKITTNAARSS---TRLRSNIPLVGATSKITQ------SGLEILDSVEIYDQP 191
+ S+ + +T A +S T + +++P + +T+ S + L IY
Sbjct: 483 DKSSTVAKTVTETAVATSVTETSVATSVPETAVATSVTETAAPATSKMRPLSPYAIYADL 542
Query: 192 CLNKAKIEESVKPETKVEAEETYDVPMNNRPAIYDVPSNNKTAFETL--SLPFIDQSIEL 249
+ S P+ E+ ++P N + V N T + ++P + +I+
Sbjct: 543 KPPTSPTPASTGPKEAASVEDNSELPGGNNDVLKTVDGNLNTIPPSTPEAVPVVSSAIDT 602
Query: 250 SITTNDREFDIKLSSKETSPMKSNPKTST-PEGSP 283
S+ + D K M ++ K T P SP
Sbjct: 603 SLASGDNTAQPKPRPLSPYTMYADMKPPTSPLPSP 637
>At5g46020.1 68418.m05659 expressed protein
Length = 164
Score = 32.7 bits (71), Expect = 0.47
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 198 IEESVKPETKVEAEETYDVPMNNRPAIYDVPSNNKTAFETLSLPFIDQSIELSITTNDRE 257
+EE + E++ E+E+ DV A+ +V + N+ +TL +D S ++ +RE
Sbjct: 45 VEEESEEESEEESEDEADVKKKGAEAVIEVDNPNRVRQKTLKAKDLDASKTTELSRRERE 104
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 31.9 bits (69), Expect = 0.82
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 51 TVDSDLQRKDLDMST-GSVKLPIATINKSSLYTLRGKSDKIGAIDTDKCDRAISET-VLI 108
T D+ LQ D D+S G K+P I + G SDK+ D R I +
Sbjct: 475 TTDNQLQL-DRDISLHGKKKVPNKRITGFQFFP--GDSDKVMVTSADSQIRIICGVDTIC 531
Query: 109 KDKPQRTLKDPKHEPTFDSLSPNVKRIISSATEA 142
K K +L+ PTF S + + K I+S+ E+
Sbjct: 532 KLKKASSLRTTLMSPTFASFTSDGKHIVSTIEES 565
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 31.9 bits (69), Expect = 0.82
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 245 QSIELSITTNDREFDIKLSSKET--SPMKSNPKTSTPEGSPAKVPKLSQVGTNSLHRKDF 302
Q++ELS T ++D +S E ++S P + P+ + + +SL RK
Sbjct: 400 QNVELSETEKMSQYDSPEASAEVYYDSIQSQPLAAKPDSLLEEPEYVDGQIKHSLKRK-- 457
Query: 303 LSPPKQLSETGPYPDVVGSTGNLKSCSVQDKD 334
+S P ++ + ++ STG+ K+ ++ KD
Sbjct: 458 VSNPSFIAAQSKFEELTSSTGSNKAMTLSSKD 489
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 31.1 bits (67), Expect = 1.4
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 17 DSLLEPKTLKPEVNSETAKDARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATIN 76
D + E + +KP+V E +D + VE E D+V D+D +K M SV+ + N
Sbjct: 65 DDMDETEEVKPKVEEEEEEDEIVESDVELEGDTVEPDNDPPQK---MGDSSVE--VTDEN 119
Query: 77 KSSLYTLRGKSDKIGAIDTDKCDRAI 102
+ + +GK+ + A+ D AI
Sbjct: 120 REAAQEAKGKA--MEALSEGNFDEAI 143
>At2g23360.1 68415.m02790 transport protein-related contains Pfam
PF05911: Plant protein of unknown function (DUF869)
profile; weak similarity to Intracellular protein
transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 886
Score = 30.7 bits (66), Expect = 1.9
Identities = 32/171 (18%), Positives = 71/171 (41%), Gaps = 15/171 (8%)
Query: 20 LEPKTLKPEVNSETAKDARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATINKSS 79
L KT++ E N +TA + N+ +E + + R +L+++ S KL
Sbjct: 686 LSRKTVEEEANDKTASASENELKLEEKQN--------MRTELEIAAASEKL------AEC 731
Query: 80 LYTLRGKSDKIGAIDTDKCDRAISETVLIKDKPQRTLKDPKHEPTFDSLSPNVKRIISSA 139
T+ ++ A+ K +SET L+ D ++ P +P+ ++ P + +
Sbjct: 732 QETILNLGKQLKALTNSKETALLSET-LMYDVTDKSNNLPDAQPSHETTKPEKRLTSQRS 790
Query: 140 TEASALKFQKITTNAARSSTRLRSNIPLVGATSKITQSGLEILDSVEIYDQ 190
+ +K + T ++ ++ G S + +E L+ + + D+
Sbjct: 791 SLLDQMKAEDHNTGESKDQKPQAADKNGKGGNSSVYNETIEALEQILLSDK 841
>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 535
Score = 30.7 bits (66), Expect = 1.9
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 137 SSATEASALKFQKITTNAARSSTRLRSNIPLVGATSKITQSGLEILDSVEIYDQPCLNKA 196
S+ EA+ + N AR S P ++ G +I + +E+ ++ N
Sbjct: 429 SAGIEAAEAALDLMKANIARKEATEES--PKKVEEKRMASWGTDIPEDLELNEEALANAL 486
Query: 197 KIEESVKPETKVEAEETYDVPMNN 220
K E+ + E K E + Y+V NN
Sbjct: 487 KKEDLSRREEKDERKRKYNVKYNN 510
>At1g17830.1 68414.m02207 expressed protein
Length = 337
Score = 30.7 bits (66), Expect = 1.9
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 30 NSETAKDARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATINKSSLYTLRGKS-- 87
N TA + V+ E + + DS++++ MS+GS K+ +++ S Y + G S
Sbjct: 104 NKSTAISRIHSDVVDCESECWSDDSEIEKLSRSMSSGSSKI-WDSVSDDSGYEIDGTSSL 162
Query: 88 --DKIGAID 94
DK+G+ID
Sbjct: 163 MRDKLGSID 171
>At5g26040.2 68418.m03099 histone deacetylase family protein (HDA2)
identical to HDA2 [Arabidopsis thaliana] GI:21105771;
similar to SP|Q96DB2 Histone deacetylase 11 (HD11) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 387
Score = 30.3 bits (65), Expect = 2.5
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 215 DVPMNNRPAIYDVPSNNKTAFETLSLPFIDQSIE-LSITTND---REFD--IKLSSKETS 268
D+ +NR I D+ + F+ + FIDQ +E +S TT D R+ D ++++S+
Sbjct: 248 DLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQ 307
Query: 269 P--MKSNPKTSTPEGSPAKVPKLSQVGTNSLHRKDF 302
P + N T +G P + K+S G S K F
Sbjct: 308 PELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVF 343
>At5g26040.1 68418.m03098 histone deacetylase family protein (HDA2)
identical to HDA2 [Arabidopsis thaliana] GI:21105771;
similar to SP|Q96DB2 Histone deacetylase 11 (HD11) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 359
Score = 30.3 bits (65), Expect = 2.5
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 215 DVPMNNRPAIYDVPSNNKTAFETLSLPFIDQSIE-LSITTND---REFD--IKLSSKETS 268
D+ +NR I D+ + F+ + FIDQ +E +S TT D R+ D ++++S+
Sbjct: 220 DLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQ 279
Query: 269 P--MKSNPKTSTPEGSPAKVPKLSQVGTNSLHRKDF 302
P + N T +G P + K+S G S K F
Sbjct: 280 PELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVF 315
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 30.3 bits (65), Expect = 2.5
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 118 DPKHEPTFDSLSPNVKRIISSATEASALKFQKITTNAARSSTRLRSNIPL-VGATSKITQ 176
+PK S SPN + +SS + + L +K+ + A +G +K
Sbjct: 765 NPKTLDVNHSTSPNGEAAVSSGGDTARLASRKLKSAANGDENSSSGTFKHGIGLLNK-DS 823
Query: 177 SGLEILDSVEIYDQPCLNKAKIEESVKPETKVEAEETYDVPM 218
+G E L+ VEI ++ + + ++ + ET EAE+ + P+
Sbjct: 824 TGKENLEDVEIANRDGVACSAVKPQKEQETGNEAEKRFGKPI 865
>At2g47860.2 68415.m05974 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 517
Score = 30.3 bits (65), Expect = 2.5
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 18 SLLEPKTLKPEVNSETAKD-ARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATIN 76
S ++ K L ++ S+ AR + EP+ V DSDLQRK + V L N
Sbjct: 107 SAMKSKGLNHDIISDILMSYARKSLQIIREPNLVKSDSDLQRKQRIVLEAVVGLLPTQAN 166
Query: 77 KSSL 80
KSS+
Sbjct: 167 KSSI 170
>At2g47860.1 68415.m05973 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 635
Score = 30.3 bits (65), Expect = 2.5
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 18 SLLEPKTLKPEVNSETAKD-ARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATIN 76
S ++ K L ++ S+ AR + EP+ V DSDLQRK + V L N
Sbjct: 225 SAMKSKGLNHDIISDILMSYARKSLQIIREPNLVKSDSDLQRKQRIVLEAVVGLLPTQAN 284
Query: 77 KSSL 80
KSS+
Sbjct: 285 KSSI 288
>At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26569
Histone H1.2 {Arabidopsis thaliana}
Length = 273
Score = 30.3 bits (65), Expect = 2.5
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 69 KLPIATINKSSLYTLRGKSDKIGAIDTDKCDRAISETVLIKDKPQRTLKDPKHEPTFDSL 128
K P A + + T + K+ A K A+S+T + KP+ + K T
Sbjct: 174 KKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRT 233
Query: 129 SPNVKRIISSA-----TEASALKFQKITTNAARSSTR 160
SP K++ + A T+ + K K+ + A R+STR
Sbjct: 234 SPG-KKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTR 269
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 30.3 bits (65), Expect = 2.5
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 169 GATSKITQSGLEILDSVEIYDQPCLNKAKIEESVKPETKVEAEETYDVPMNNRPAIYDVP 228
G +SG E + E D ++++EE + E+EE+ + ++ + I +
Sbjct: 239 GTEESREKSGTEESEVEEKKDNGSSEESEVEEKKENRGIDESEESKEKDIDEKANIEEAR 298
Query: 229 SNNKTAFETLSLPFIDQSIELSITTNDREFD----IKLSSKETSPMKSNPKTSTPEGSPA 284
NN + S + + S + N + + IK E S +KS +T G +
Sbjct: 299 ENNYKGDDASSEVVHESEEKTSESENSEKVEDKSGIKTEEVEDSVIKSVLPNTTDNGESS 358
Query: 285 KVPKLSQVGTNSLHRKDFLSPPKQLSET 312
K G++S H D L K E+
Sbjct: 359 SDEK--STGSSSGHESDSLEGIKSEGES 384
>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
to wound-responsive protein 14.05 (GI:16506638)
[Castanea sativa]
Length = 699
Score = 30.3 bits (65), Expect = 2.5
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 25 LKPEVNSETAKDARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATINKSSLYTLR 84
L P+ +S++ + N PP +S P +V+ S + R+ ++ G L IAT +K+S+ +
Sbjct: 280 LHPKCSSKSVHEQSNSPPGKSRP-NVSAKSAVVRQ--QVNNGMPDLDIATESKTSI-QIS 335
Query: 85 GKSDKIGAIDTDKCDRAIS--ETVLIKDKP 112
KS G ++AI E ++ + +P
Sbjct: 336 KKSGSNGRPKYSTLEKAIRNLEKLVAESRP 365
>At1g17690.1 68414.m02190 expressed protein
Length = 754
Score = 30.3 bits (65), Expect = 2.5
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 23 KTLKPEVNSETAKDARNDPPVESEPDSVTVDSDLQRKDLDMSTGSVKLPIATINKSSLYT 82
K ++ + S + D+ + +E+E +++ Q ++L +S GS +A +NK
Sbjct: 28 KHVEKTIVSNPSTDSPEESSIEAESEAMVYREPTQYQNLLVSLGSSNKVVADMNKRRQRE 87
Query: 83 LRGKSD 88
GKSD
Sbjct: 88 EEGKSD 93
>At1g79150.1 68414.m09229 expressed protein ; expression supported
by MPSS
Length = 495
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 70 LPIATINKSSLYTLRGKSDKIGAIDTDKCDRAISETVLIKDKPQRTLKDPK 120
LP+ T++ Y K K+ +TD+ ++ + E + +K QR K K
Sbjct: 95 LPVKTLDGKLHYRTESKKSKLAEAETDEAEKDVLEDEHVLNKSQRREKAKK 145
>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
contains Pfam PF00786: P21-Rho-binding domain
Length = 220
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 241 PFIDQSIELSITTNDREFDIKLSSKETSPMKSNPKTSTPEGS 282
P + + +S+TTND E LS T KS + P+GS
Sbjct: 145 PSVRRRRVVSVTTNDMEGSYPLSDSSTHSRKSTSRHRKPKGS 186
>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At2g06430,
At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 836
Score = 29.5 bits (63), Expect = 4.4
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 10/184 (5%)
Query: 28 EVNSETAKDARNDPPVESEPDSVTVDSDLQRKDLDMST--GSVKLPIATINKSSLYTLRG 85
+V+ +T K+A++ D D+D D + S + + +I+ + +T
Sbjct: 524 DVDVQTRKEAQSKKRKIIGNDGDNADNDGDNDDFQPAPQRNSKRGTVPSIHTQAPFTAEK 583
Query: 86 KSDKI----GAIDTDKCDRAISETVLIKDKPQRTLKDPKHEPTFDSLSPNVKRIISSATE 141
K I +D + ++ K+KP + F +L K I ++ +
Sbjct: 584 KKHPILHPFAKVDATRLEKLAEWKKSRKNKPLSIAGNIVDTKWFTTLETPGKAITATHVD 643
Query: 142 ASALKFQKITTNAARSSTRLRSNIPLVGAT--SKITQSGLEILDSVEIYDQPCLNKAKIE 199
A AL+ K T + ++ VG++ + I +S +E LD+ E + ++K IE
Sbjct: 644 A-ALELMK-TRKESNPELFKNKSVVFVGSSFLNVIDESDMEFLDNKEGFQSEEISKLIIE 701
Query: 200 ESVK 203
E K
Sbjct: 702 EETK 705
>At2g38910.1 68415.m04783 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase, isoform AK1 (CDPK) [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 583
Score = 29.1 bits (62), Expect = 5.8
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 245 QSIELSITTNDREFDIKLSSKETSPMKSNPKTSTPEGSPAKVPKLSQVGTNSLHRKDFLS 304
QS+ ++ N + D SSK+ S K N K+ + S V ++L
Sbjct: 17 QSVSAAVWRNQKPDDSIKSSKDESSRKKNDKSVNGDDSNGHVSSTVDPAPSTLPTPSTPP 76
Query: 305 PPKQLSETGPYP 316
PP +++ P P
Sbjct: 77 PPVKMANEEPPP 88
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 29.1 bits (62), Expect = 5.8
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 131 NVKRIISSATEASALKFQKITTNAARSSTRLRSNIPLVGATS 172
N+K +I+ E FQK+ N A S R SN+ LVG TS
Sbjct: 816 NLKDVIAKKDE-ELQNFQKVKGNNATSLKRGLSNLRLVGPTS 856
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 29.1 bits (62), Expect = 5.8
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 131 NVKRIISSATEASALKFQKITTNAARSSTRLRSNIPLVGATS 172
N+K +I+ E FQK+ N A S R SN+ LVG TS
Sbjct: 816 NLKDVIAKKDE-ELQNFQKVKGNNATSLKRGLSNLRLVGPTS 856
>At1g15420.1 68414.m01850 expressed protein
Length = 278
Score = 29.1 bits (62), Expect = 5.8
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 199 EESVKPETKVEAEETYDVPMNNRPAIYDVPSNNKTAFETLSLPFIDQSIELSITTNDREF 258
E+ K ++K AE D+P + R + D + +TL+ P I +E N +
Sbjct: 25 EKKHKKKSKKRAEPEPDIP-STRDSGLDEDRDGVLVDDTLNEPTIGDKLESLDLLNGEKV 83
Query: 259 DIKLSSKETSPMKSNPKTS 277
+ + S+++++P P T+
Sbjct: 84 NSEESNRDSAPGDDKPPTA 102
>At1g05080.1 68414.m00510 F-box family protein contains F-box domain
Pfam:PF00646
Length = 439
Score = 29.1 bits (62), Expect = 5.8
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 128 LSPNVKRIISSATEASALKFQKITTNAARSSTR-LRSNIPLVGATSKITQSGLEILDSVE 186
+ NVK L ++ + ++ ++ R L N P V T +IT LE S
Sbjct: 199 IDDNVKTFTVKVPSLLELTYKNLCSDVVDNTDRCLVVNAPAVN-TCQITDYSLE---SFS 254
Query: 187 IYDQPCLNKAKI--EESVKPETK 207
I D PCL A I +E+ P+ K
Sbjct: 255 IEDMPCLQDATIDVDEAYHPDDK 277
>At5g64540.1 68418.m08111 hypothetical protein
Length = 440
Score = 28.7 bits (61), Expect = 7.7
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 229 SNNKT-AFETLSLPFIDQSIELSITTNDREFDIKLSSKETSPMKSNPKTSTPEGSP---- 283
S N+T + S+P S +L+ TT+D +S+ T + ++ TST SP
Sbjct: 273 SGNQTPTTSSHSVPTTPSSSQLNTTTSDSPVHTPISTTLTVDLNTSTTTSTHSSSPSVDR 332
Query: 284 ----AKVPKLSQV---GTNSLHRKDFLSPPKQLSET 312
A++P LS G ++ +K L+ P ET
Sbjct: 333 LDTVAQIPDLSSSPSDGLETMTQKPDLASPSAGRET 368
>At3g17340.1 68416.m02216 importin-related contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 822
Score = 28.7 bits (61), Expect = 7.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 18 SLLEPKTLKPEVNSETAKDARNDPPVESEPDSVTVDSDLQRKDLD 62
SL+E EVN ET D + P E E +S DS+ + + D
Sbjct: 688 SLMEASRRLKEVNEETDDDEDDGEPGEEETESEETDSNDEDSESD 732
>At3g13360.1 68416.m01681 expressed protein
Length = 459
Score = 28.7 bits (61), Expect = 7.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 31 SETAKDARNDP-PVESEPDSVTVDSDLQRKDLDMSTGSVKL 70
S+T K A + +E E ++DSDL+ D STGSV +
Sbjct: 175 SDTIKRASEERGDIEKEKPCSSLDSDLRSSDFVFSTGSVSV 215
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 28.7 bits (61), Expect = 7.7
Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 9/174 (5%)
Query: 119 PKHEPTFDSLSPNVKRIISSATEASALKFQKITTNAARSSTRLRSNIPLVGATSKITQSG 178
PK T S + V+R + ++S T + S + + ++P+ + +T+S
Sbjct: 99 PKQVSTTASRTDPVRRSLPELRKSSVSSLSAKTVSKP-SLSESKKSVPVSPGSRSLTKST 157
Query: 179 LEILDSVEIYDQPCLNKAKIEESVKPETKVEAEETYDVPMNNRPAIYDVPSNNKTAFETL 238
L E +P ++ + P + V++ + + ++ ++ +T + +
Sbjct: 158 GFSLSKPESSARPAMS-VSVSSKRAPSSSVDSSGS----RTSSGRLHSTLTSGRTVSK-V 211
Query: 239 SLPFIDQSIELSITTNDREFDIKLSSKETSPMKSNPKTSTPEGSPAKVPKLSQV 292
S P S +S + + F L TS KTSTPE +++ L +V
Sbjct: 212 SSPSAGSSPSVSSSIRSKSFSSPLD--RTSNFSGRKKTSTPESRDSRLIILPKV 263
>At2g24490.1 68415.m02926 replication protein, putative similar to
replication protein A 30kDa [Oryza sativa (japonica
cultivar-group)] GI:13516746; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 279
Score = 28.7 bits (61), Expect = 7.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 382 DDHSDVDITSANGSNNYVNKAGIMNNSVSERNSDGKPRK 420
D V+ T GSN N+A ++N VS +N+DG RK
Sbjct: 178 DVTQSVNTTFQGGSNT--NQATLLNPVVSSQNNDGNGRK 214
>At1g08820.1 68414.m00982 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 386
Score = 28.7 bits (61), Expect = 7.7
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 242 FIDQSIELSITTNDREFDIKLSSK-ETSPMKSN-------PKTSTPEGSPAKVPKLSQVG 293
F+ QS +S T D + + SK E ++ N P + +PE SP PK V
Sbjct: 86 FLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDSPELSPINTPKQGAVF 145
Query: 294 TNSL------HRKDFLSPPKQLSETGPYPDVVG 320
+S+ + + L+PP+ E P +VG
Sbjct: 146 EDSILKDRLYSQSETLAPPQYEGEIVKEPRMVG 178
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.307 0.126 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,735,222
Number of Sequences: 28952
Number of extensions: 414133
Number of successful extensions: 1246
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 41
length of query: 420
length of database: 12,070,560
effective HSP length: 83
effective length of query: 337
effective length of database: 9,667,544
effective search space: 3257962328
effective search space used: 3257962328
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 61 (28.7 bits)
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