Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000107-TA|BGIBMGA000107-PA|IPR002056|Protein import
receptor MAS20
(155 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06) 112 1e-25
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06) 28 4.0
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) 27 5.3
SB_45112| Best HMM Match : YscO (HMM E-Value=3) 27 7.0
SB_38810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_7544| Best HMM Match : TFIIB (HMM E-Value=4.2) 27 7.0
SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8) 27 9.2
SB_2797| Best HMM Match : YscO (HMM E-Value=2.8) 27 9.2
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_46621| Best HMM Match : Ribosomal_L34 (HMM E-Value=3.6) 27 9.2
>SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)
Length = 151
Score = 112 bits (269), Expect = 1e-25
Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 11 IAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRE--RRLNAQQNASRSRTLGGPVPDMNDH 68
+ G+ G++FL YC+YFD +RR DP +KKKL E RR AQ+ + + + +PD+ D
Sbjct: 9 VVAGVCGSMFLAYCIYFDYKRRSDPDYKKKLIEKRRRERAQRQEADAADMQSRIPDLTDT 68
Query: 69 EAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQQTMPAPIFHLLL 128
A+Q+FFL+++Q V+HL AVAVCGQ +QLL V +QT+P +F +L+
Sbjct: 69 AAVQKFFLEEVQIGEDLLTKGEYESAVKHLTNAVAVCGQPQQLLQVFKQTLPPAVFQMLI 128
Query: 129 KKLPEVSE 136
+ ++ +
Sbjct: 129 DNINQMKD 136
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 27 FDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDHEAMQRF 74
F Q + D LFK++ E LN ++ R L PV +D + F
Sbjct: 125 FSQAAKVDDLFKEQQTEEFLNPLHKGNKRRKLPNPVKINSDTPVIPHF 172
>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
Length = 1098
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 31 RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDM 65
RR PL+KKK R + A QN +R PD+
Sbjct: 163 RRNKPLYKKKPRTLCVQAFQNGNRDNYARVTAPDL 197
>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
Length = 1086
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 22 GYCVYFDQQRRKDPLFKKKLRERRLNAQQN 51
G CVY D QR P F ++E R + ++N
Sbjct: 75 GDCVYIDSQRPDVPYFICSIKEFRTSRREN 104
>SB_45112| Best HMM Match : YscO (HMM E-Value=3)
Length = 247
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 127 LLKKLPEVSERLRSSMKARSNVMQEEDVE 155
LLKKL + R + + + R NV Q ++ E
Sbjct: 219 LLKKLKRIRNRYKDNTRKRQNVNQHQETE 247
>SB_38810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 101 AVAVCGQTE---QLLSVLQQTMPAPIFHLLLKKLPEVSE 136
++ VCG +E ++ VL Q + F +L K LPEV +
Sbjct: 108 SIPVCGFSELVQAVVKVLSQVLDVNCFDILAKMLPEVKK 146
>SB_7544| Best HMM Match : TFIIB (HMM E-Value=4.2)
Length = 273
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 9 LGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRS-RTLGGPVPDMND 67
+G G A T+ LG R + K + R A+ + LGGPVP++N
Sbjct: 72 VGFVAG-AATIVLGVLAMLVSMPRHEQFNKMEERTVERTAEDRSPPPYNILGGPVPEINA 130
Query: 68 HEAMQRFFL 76
M F L
Sbjct: 131 PTLMPEFAL 139
>SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)
Length = 182
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 1 MMEITRTTLG---IAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRS 55
M + T+ LG +AV +AG L + +YF + + + +K++ RERR+ N +++
Sbjct: 1 MEQKTKEGLGYFFLAVAVAGILIILLMIYFCIKDKME--YKRRERERRVRFNLNNNKT 56
>SB_2797| Best HMM Match : YscO (HMM E-Value=2.8)
Length = 246
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 127 LLKKLPEVSERLRSSMKARSNVMQEEDVE 155
LLKKL + R + + + R NV Q ++ E
Sbjct: 218 LLKKLKRIRNRYKDNNRKRQNVNQHQETE 246
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 27 FDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMN 66
+DQ R + ++ R R+ N ++ R R GG + N
Sbjct: 774 YDQAERNEDTLERMARSRKKNQRKKLKRKRLKGGDTINWN 813
>SB_46621| Best HMM Match : Ribosomal_L34 (HMM E-Value=3.6)
Length = 150
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 127 LLKKLPEVSERLRSSMKARSNVMQEEDVE 155
LLKKL + R + + + R NV Q ++ E
Sbjct: 122 LLKKLKRIRNRYKDNNRKRQNVNQHQETE 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,905,030
Number of Sequences: 59808
Number of extensions: 121399
Number of successful extensions: 282
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 11
length of query: 155
length of database: 16,821,457
effective HSP length: 76
effective length of query: 79
effective length of database: 12,276,049
effective search space: 969807871
effective search space used: 969807871
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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