GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000107-TA|BGIBMGA000107-PA|IPR002056|Protein import
receptor MAS20
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    30   0.73 
04_04_1675 - 35280705-35281493,35281544-35281795                       29   2.2  
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984...    27   5.1  
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263     27   6.8  
04_04_1052 - 30427508-30428083,30429526-30429783                       27   9.0  

>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 55  SRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSV 114
           S+T G  VP  N  EA+    L  I               +EHL  A+++CGQT  L   
Sbjct: 262 SQTEGSYVPKNNLEEAI--LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKH 319

Query: 115 LQQTMP 120
           L++ +P
Sbjct: 320 LEEVLP 325


>04_04_1675 - 35280705-35281493,35281544-35281795
          Length = 346

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 24  CVYFDQQ-RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDH 68
           C +FD + RR+D  F KKL    LN  ++ +R + L    PD  D+
Sbjct: 214 CAFFDDRARRQDDTFSKKL---ALNCTKDPNRLQNLDVITPDAFDN 256


>02_02_0401 +
           9847398-9847463,9848916-9849019,9849873-9849876,
           9849968-9851230
          Length = 478

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 127 LLKKLPEVSERLRSSMKARSNVMQEEDV 154
           LLKK P + E L  S  + SN++Q+ DV
Sbjct: 104 LLKKSPGLPENLSVSQSSDSNILQQCDV 131


>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
          Length = 769

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 6   RTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---LNAQQNASRSRTLGG 60
           +   G++VG+   LF+ + +Y   Q+RK    K++  E+    L  QQ +S   T GG
Sbjct: 372 KVVTGVSVGVFLLLFMLFWLYLGLQKRKLIRTKQRFFEQNGGVLLQQQMSSYGGTSGG 429


>04_04_1052 - 30427508-30428083,30429526-30429783
          Length = 277

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 38  KKKLRERRLNAQQNASRSRTLGGPVPDMNDHEAMQRFFLQQ 78
           K+K+ ++R  +Q+ A +SRT    +     HE +Q F +QQ
Sbjct: 165 KRKIADKRQQSQRMAEKSRTSISSI-----HELLQDFLVQQ 200


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,804
Number of Sequences: 37544
Number of extensions: 108798
Number of successful extensions: 266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 5
length of query: 155
length of database: 14,793,348
effective HSP length: 76
effective length of query: 79
effective length of database: 11,940,004
effective search space: 943260316
effective search space used: 943260316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)