Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000107-TA|BGIBMGA000107-PA|IPR002056|Protein import
receptor MAS20
(155 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical pr... 104 2e-23
Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical pr... 38 0.004
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 31 0.48
U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical pr... 28 3.4
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 27 6.0
AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical ... 27 6.0
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 27 6.0
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 27 6.0
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 27 6.0
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 27 6.0
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical
protein F23H12.2 protein.
Length = 188
Score = 104 bits (250), Expect = 2e-23
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 1 MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNAS-----RS 55
++ ++ + +A GIAG FLGYC+YFD +R P +K K+R++R AQ A R
Sbjct: 5 ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKR-RAQAGAGGMAPRRP 63
Query: 56 RTLGGPV-PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSV 114
G PD+ D MQRFFLQ++Q H+ AV +CG+++QLLS+
Sbjct: 64 AAAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSI 123
Query: 115 LQQTMPAPIFHLLLKKLPEVSERLRSSMKARSNVMQEE 152
QQT+ F ++++LP ERL A+++ + E
Sbjct: 124 FQQTLSEDQFRAVVQQLPSTRERLAEMFGAKADEAENE 161
>Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical
protein F32B4.2 protein.
Length = 167
Score = 37.5 bits (83), Expect = 0.004
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Query: 10 GIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGP-------V 62
G+ VG A L + Y+ Q+++ E ++S R GG +
Sbjct: 13 GVVVGGAALLAIAAYYYWSQKKKSSDTSSATSSESNDVVMMSSSEPRADGGADSKAKFNI 72
Query: 63 PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXX-VEHLGQAVAVCGQTEQLLSVLQQTMPA 121
D N ++ F++Q+ H+ A+ + G+T QLL VL+ ++
Sbjct: 73 EDENVRRVCEKLFMEQMDLGEAYLEDEETEELGAIHMANAIVLTGETAQLLKVLRGSISP 132
Query: 122 PIFHLLLKKLPEVSERLRSSMK 143
F + K LP R+ ++
Sbjct: 133 AHFANIQKYLPSADLRVHQLLQ 154
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 20 FLGYCVYFDQQRRKDPLFKKKLRERRLN--AQQNASRSRTLGGPVPDMNDHEA 70
F YC + QQ R + + ++K ERRL ++ +AS++R GG P E+
Sbjct: 205 FGAYCYWKVQQWRDEKMAREKAWERRLARVSEVSASKNRNAGGVDPAKRPRES 257
>U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical
protein F07F6.2 protein.
Length = 261
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 23 YCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSR 56
Y + ++ +R++ + K+KL E++ +QNA R +
Sbjct: 216 YHLRIEKVKRREQVLKQKLEEKKAKRRQNAERRK 249
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 104 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 137
V G TEQ ++ ++ + P+ HL + + ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193
>AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical
protein Y26E6A.1 protein.
Length = 449
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 31 RRKDPLFKKKLRERRLNAQQNASRSRTLGGP 61
RR +F++ RRL A + A +R GGP
Sbjct: 37 RRHREMFERARANRRLQADRGAQAARERGGP 67
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 104 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 137
V G TEQ ++ ++ + P+ HL + + ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 123 IFHLLLKKLPEVSERLRSSMKARSNVMQEE 152
+F +++KK+ + S L +MKA+ ++ EE
Sbjct: 308 MFEVMIKKVQQQSSALEEAMKAQDSIATEE 337
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 123 IFHLLLKKLPEVSERLRSSMKARSNVMQEE 152
+F +++KK+ + S L +MKA+ ++ EE
Sbjct: 307 MFEVMIKKVQQQSSALEEAMKAQDSIATEE 336
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 104 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 137
V G TEQ ++ ++ + P+ HL + + ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
D2045.2 protein.
Length = 1792
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 95 VEHLGQAVAVCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSERLRSSM--KARSNVMQ 150
+E L A A +T +++ + +P +L+ P++++ LRSS+ RS+ Q
Sbjct: 1281 IEALDDARASIARTSPMMTAVNDLLPHIDSQVLIDMTPKIADTLRSSVGTSTRSSAAQ 1338
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,630
Number of Sequences: 27539
Number of extensions: 95036
Number of successful extensions: 339
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 11
length of query: 155
length of database: 12,573,161
effective HSP length: 76
effective length of query: 79
effective length of database: 10,480,197
effective search space: 827935563
effective search space used: 827935563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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