GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000107-TA|BGIBMGA000107-PA|IPR002056|Protein import
receptor MAS20
         (155 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 11  IAVGIAGTLFLGYCVYF 27
           IAVG +G +F GY + F
Sbjct: 235 IAVGASGNVFAGYLLVF 251


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 95   VEHLGQAVAVCGQTEQLLSVLQQTMPAPI 123
            +EH    + +C     L  VL+ + PAP+
Sbjct: 1088 LEHGAAGLRLCLHHRDLPCVLRASTPAPV 1116


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 100 QAVAVCGQTEQLLSVLQQTMPAP 122
           QA  + G+ +QL+ +L Q  P P
Sbjct: 888 QASNLYGRDQQLVQLLVQEPPQP 910


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 100 QAVAVCGQTEQLLSVLQQTMPAP 122
           QA  + G+ +QL+ +L Q  P P
Sbjct: 884 QASNLYGRDQQLVQLLVQEPPQP 906


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,623
Number of Sequences: 429
Number of extensions: 1068
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 140,377
effective HSP length: 53
effective length of query: 102
effective length of database: 117,640
effective search space: 11999280
effective search space used: 11999280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)