GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000107-TA|BGIBMGA000107-PA|IPR002056|Protein import
receptor MAS20
         (155 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)...    29   1.1  
At1g27460.1 68414.m03348 calmodulin-binding protein similar to c...    27   4.3  
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote...    27   7.5  
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p...    27   7.5  
At5g28680.1 68418.m03519 protein kinase family protein contains ...    26   10.0 

>At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)
           identical to heat shock protein 70 [Arabidopsis
           thaliana] GI:6746592
          Length = 718

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 95  VEHLGQAVAVCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSERLRS 140
           ++   QA +V  QTE+ L  L + +P P+   +  KL E+ E++ S
Sbjct: 604 IDTKNQADSVVYQTEKQLKELGEKIPGPVKEKVEAKLQELKEKIAS 649


>At1g27460.1 68414.m03348 calmodulin-binding protein similar to
           calmodulin-binding protein MPCBP [Zea mays] GI:10086260;
           contains Pfam profile PF00515: TPR Domain
          Length = 694

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 95  VEHLGQAVAVCGQTEQLLSVLQQTMP 120
           ++HL  A+++ GQ E L + L+QT+P
Sbjct: 276 MDHLTYALSMTGQFEVLANYLEQTLP 301


>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 669

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 9   LGIAVGIAGTLFLGYC-VYFD---QQRRKDPLFKKKLR-ERRLNAQQNASRSRTLGGPVP 63
           LG   G+A  + LG C V F    ++R  D +++   + E  L+ QQ +         VP
Sbjct: 285 LGFTAGLASLIVLGLCLVVFSLVIKKRNDDGIYEPNPKGEASLSQQQQSQNQTPRTRAVP 344

Query: 64  DMN-DHEAMQR 73
            +N D E+ +R
Sbjct: 345 VLNSDTESQKR 355


>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
           pollen-specific calmodulin-binding protein MPCBP
           GI:10086260 from [Zea mays]; contains Pfam profile
           PF00515: TPR Domain
          Length = 704

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 96  EHLGQAVAVCGQTEQLLSVLQQTMP 120
           EHL  A+++C QT  L   L++ MP
Sbjct: 279 EHLTFALSLCSQTAVLAKQLEEVMP 303


>At5g28680.1 68418.m03519 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 858

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 4   ITRTTLGIAVGIAGTLFLGYCVYFDQQRRK 33
           IT   +G A G+A  LF   C    Q++RK
Sbjct: 432 ITAFVIGSAGGVAAVLFCALCFTMYQRKRK 461


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,856
Number of Sequences: 28952
Number of extensions: 87783
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 6
length of query: 155
length of database: 12,070,560
effective HSP length: 75
effective length of query: 80
effective length of database: 9,899,160
effective search space: 791932800
effective search space used: 791932800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)