Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
         (93 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   2.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   3.7  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    20   3.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 2.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 59  VAKYLDVHERIGKKLSNMSQGETEDLTKVNI 89
           +AK++  H   GKK S+ S  ++E+ ++ +I
Sbjct: 390 LAKHVKTHNGNGKKGSSDSCSDSEENSQSDI 420


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 42   YHEPELGKGESVCLDRCVAKY 62
            +++PE G  E+V +   V KY
Sbjct: 1432 HYKPEFGDWETVQIGPTVEKY 1452


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative
          cytochrome P450 monooxigenase protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 58 CVAKYLDVHERIGKKLSNMSQGETE 82
          C+A + D+ ERI +++      +T+
Sbjct: 11 CIACHPDIQERIFEEIEETFSDDTK 35


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,033
Number of Sequences: 317
Number of extensions: 773
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 93
length of database: 114,650
effective HSP length: 48
effective length of query: 45
effective length of database: 99,434
effective search space:  4474530
effective search space used:  4474530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)