Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
(93 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161712-17|CAC70139.1| 86|Caenorhabditis elegans Hypothetical... 108 5e-25
AF150094-1|AAD40000.1| 86|Caenorhabditis elegans small zinc fi... 108 5e-25
AC024765-4|AAF60525.1| 83|Caenorhabditis elegans Human ddp rel... 33 0.037
Z96047-1|CAB09410.1| 108|Caenorhabditis elegans Hypothetical pr... 29 0.46
AF144704-1|AAD39955.1| 108|Caenorhabditis elegans small zinc fi... 29 0.46
AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical ... 28 0.80
Z81537-4|CAB04375.2| 669|Caenorhabditis elegans Hypothetical pr... 27 2.4
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 26 3.2
AL110480-1|CAB60325.2| 437|Caenorhabditis elegans Hypothetical ... 26 3.2
Z81502-5|CAB04108.2| 672|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z72511-5|CAD89724.1| 314|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL132862-34|CAB60536.2| 395|Caenorhabditis elegans Hypothetical... 25 5.6
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 25 9.8
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 25 9.8
AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical ... 25 9.8
>AL161712-17|CAC70139.1| 86|Caenorhabditis elegans Hypothetical
protein Y66D12A.22 protein.
Length = 86
Score = 108 bits (260), Expect = 5e-25
Identities = 47/79 (59%), Positives = 62/79 (78%)
Query: 9 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 68
A++ V ELE+EMMSDMY R+ ++C KCI + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5 AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64
Query: 69 IGKKLSNMSQGETEDLTKV 87
+GK+L++MSQG+ L K+
Sbjct: 65 LGKRLTSMSQGDEAALQKI 83
>AF150094-1|AAD40000.1| 86|Caenorhabditis elegans small zinc
finger-like protein protein.
Length = 86
Score = 108 bits (260), Expect = 5e-25
Identities = 47/79 (59%), Positives = 62/79 (78%)
Query: 9 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 68
A++ V ELE+EMMSDMY R+ ++C KCI + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5 AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64
Query: 69 IGKKLSNMSQGETEDLTKV 87
+GK+L++MSQG+ L K+
Sbjct: 65 LGKRLTSMSQGDEAALQKI 83
>AC024765-4|AAF60525.1| 83|Caenorhabditis elegans Human ddp
related protein 1 protein.
Length = 83
Score = 32.7 bits (71), Expect = 0.037
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 2 AVPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGES-VCLDRCVA 60
A PQL+ QL E + + ++ + L C C Y P G++ C+ CV
Sbjct: 4 ADPQLNRFLQQLQAETQRQKFTEQVHTLTGRCWDVCFA-DYRPPSKMDGKTQTCIQNCVN 62
Query: 61 KYLDVHERIGKKLSNMSQG 79
+ +D + + LS M+ G
Sbjct: 63 RMIDASNFMVEHLSKMNGG 81
>Z96047-1|CAB09410.1| 108|Caenorhabditis elegans Hypothetical
protein DY3.1 protein.
Length = 108
Score = 29.1 bits (62), Expect = 0.46
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 15 QELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLS 74
Q+ + ++ + C KCI L GE CL RC+ ++++ + + L
Sbjct: 27 QQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCMDRFMESWNLVSQTLQ 84
Query: 75 NMSQGE 80
Q E
Sbjct: 85 KRLQEE 90
>AF144704-1|AAD39955.1| 108|Caenorhabditis elegans small zinc
finger-like protein protein.
Length = 108
Score = 29.1 bits (62), Expect = 0.46
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 15 QELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLS 74
Q+ + ++ + C KCI L GE CL RC+ ++++ + + L
Sbjct: 27 QQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCMDRFMESWNLVSQTLQ 84
Query: 75 NMSQGE 80
Q E
Sbjct: 85 KRLQEE 90
>AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical
protein F37C4.3 protein.
Length = 685
Score = 28.3 bits (60), Expect = 0.80
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 7 DPAKL--QLVQELEIEMMSDMYNRLVSACHRKCIPIKY 42
DP L QLV E EM Y +L C+ KC+ + Y
Sbjct: 600 DPVILDKQLVDFSEYEMARKRYAQLFQDCNEKCVRVDY 637
>Z81537-4|CAB04375.2| 669|Caenorhabditis elegans Hypothetical
protein F41D3.4 protein.
Length = 669
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 14 VQELEIEMMSDMYNRLVSACHRKCIPIKY 42
+++ E+M + Y +L C+ KC+ + Y
Sbjct: 593 IEQTRYELMRERYGQLEKDCNGKCVLVDY 621
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 32 ACHRKCIPIKYHE-------PELGKGESVCLDRC 58
AC+ +C+P+ +H+ + KG++VC D C
Sbjct: 77 ACYEECLPLDHHKCPAASKIHKTTKGKTVCNDDC 110
>AL110480-1|CAB60325.2| 437|Caenorhabditis elegans Hypothetical
protein Y24F12A.1 protein.
Length = 437
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 16 ELEIEMMSDMYNRLVSACHRKCIPIKYH--EPELGKGESVCLDRCVAKYLDVHERIGK 71
E E+E+ D++ + V+ + +P+ H G+ E CL + + K +DV+ + K
Sbjct: 268 ESELEVQKDVFEKHVALAFKFKLPLVIHCRNGSKGRAEEECL-QILKKKMDVNHKFLK 324
>Z81502-5|CAB04108.2| 672|Caenorhabditis elegans Hypothetical
protein F14B6.5 protein.
Length = 672
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 5 QLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKY 42
+L + QL+ E+ Y++LV+ C +C+ + Y
Sbjct: 587 RLGQSNAQLIDGSSYELARRRYSQLVADCDGRCVLLDY 624
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 75 NMSQGETEDLTKVNIPDK 92
N+ +G TED TKV PD+
Sbjct: 2306 NIRKGTTEDFTKVEWPDE 2323
>Z72511-5|CAD89724.1| 314|Caenorhabditis elegans Hypothetical
protein F55A11.11 protein.
Length = 314
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 63 LDVHERIGKKLSNMSQGETEDLT 85
+DV +IG+ +S G TEDLT
Sbjct: 228 MDVASKIGQHGDMLSSGHTEDLT 250
>AL132862-34|CAB60536.2| 395|Caenorhabditis elegans Hypothetical
protein Y73F8A.11 protein.
Length = 395
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 29 LVSACHRKCIPIKYHEPE 46
+V CH C P+K EP+
Sbjct: 319 IVDTCHDSCPPLKLDEPD 336
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 32 ACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMS 77
A C P+ + EPE K + +AK D ++ + L N+S
Sbjct: 3295 AAFASCFPVAFLEPEFNKSNKFSV---LAKSQDQSVQVQEMLQNLS 3337
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 32 ACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMS 77
A C P+ + EPE K + +AK D ++ + L N+S
Sbjct: 3307 AAFASCFPVAFLEPEFNKSNKFSV---LAKSQDQSVQVQEMLQNLS 3349
>AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical
protein Y32F6B.1 protein.
Length = 758
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 4 PQLDPAKLQLVQELEIEMMSDMYNRLVSACH 34
P +DP K Q+V E + SD+ + V CH
Sbjct: 136 PLIDP-KNQVVMNYEGDEKSDLLQKYVEYCH 165
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,417
Number of Sequences: 27539
Number of extensions: 85553
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 16
length of query: 93
length of database: 12,573,161
effective HSP length: 69
effective length of query: 24
effective length of database: 10,672,970
effective search space: 256151280
effective search space used: 256151280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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