Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
(93 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29530.1 68415.m03587 mitochondrial import inner membrane tra... 61 9e-11
At3g46560.1 68416.m05054 mitochondrial import inner membrane tra... 47 2e-06
At5g50810.1 68418.m06295 mitochondrial import inner membrane tra... 41 1e-04
At1g61570.1 68414.m06938 mitochondrial import inner membrane tra... 32 0.061
At1g50720.1 68414.m05703 stigma-specific Stig1 family protein si... 29 0.33
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c... 28 0.75
At3g02710.1 68416.m00262 nuclear associated protein-related / NA... 25 5.3
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa... 25 5.3
At1g04900.1 68414.m00487 expressed protein contains Pfam PF02636... 25 5.3
At5g46600.1 68418.m05737 expressed protein contains Pfam profile... 25 7.0
At4g30150.1 68417.m04287 expressed protein 25 7.0
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 25 7.0
>At2g29530.1 68415.m03587 mitochondrial import inner membrane
translocase (TIM10) identical to mitochondrial import
inner membrane translocase subunit Tim10 [Arabidopsis
thaliana] Swiss-Prot:Q9ZW33; contains Pfam domain,
PF02953: Tim10/DDP family zinc finger
Length = 83
Score = 61.3 bits (142), Expect = 9e-11
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 16 ELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLS 74
+ E+E +++N+L C KC+ +Y E EL GE+ C+DRCV+KY V+ +G+ LS
Sbjct: 19 QTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLS 77
>At3g46560.1 68416.m05054 mitochondrial import inner membrane
translocase (TIM9) identical to mitochondrial import
inner membrane translocase subunit Tim9 [Arabidopsis
thaliana] Swiss-Prot:Q9XGX9; contains Pfam domain,
PF02953: Tim10/DDP family zinc finger
Length = 93
Score = 46.8 bits (106), Expect = 2e-06
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 3 VPQLDPAKL-QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAK 61
+P+ D AK+ ++ +L++ MYN LV C C+ + L K E C+ RC K
Sbjct: 12 LPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVD-SFTRKSLQKQEETCVMRCAEK 70
Query: 62 YLDVHERIGKKLSNMSQ-GETED 83
+L R+G + + ++Q T+D
Sbjct: 71 FLKHTMRVGMRFAELNQNAPTQD 93
>At5g50810.1 68418.m06295 mitochondrial import inner membrane
translocase (TIM8) identical to mitochondrial import
inner membrane translocase subunit Tim8 [Arabidopsis
thaliana] Swiss-Prot:Q9XGY4; contains Pfam domain,
PF02953: Tim10/DDP family zinc finger
Length = 77
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 7 DPAKLQ-LVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDV 65
+P LQ L QE E M+++M +++ S C KCI + ES CL C +Y+D+
Sbjct: 8 NPELLQFLAQEKERAMVNEMVSKMTSVCWDKCI-TSAPGSKFSSSESSCLTHCAQRYMDM 66
Query: 66 HERIGKKLSN 75
I K+ ++
Sbjct: 67 SMIIMKRFNS 76
>At1g61570.1 68414.m06938 mitochondrial import inner membrane
translocase (TIM13) identical to mitochondrial import
inner membrane translocase subunit Tim13 [Arabidopsis
thaliana] Swiss-Prot:Q9XH48; contains Pfam domain,
PF02953: Tim10/DDP family zinc finger
Length = 87
Score = 31.9 bits (69), Expect = 0.061
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 6 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDV 65
++ K QL Q E++ + + C KC+ LG ES C+ RCV +Y++
Sbjct: 22 MESVKTQLAQAYAEELIETLRTK----CFDKCVTKP--GSSLGGSESSCISRCVERYMEA 75
Query: 66 HERIGKKL 73
I + L
Sbjct: 76 TAIISRSL 83
>At1g50720.1 68414.m05703 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 154
Score = 29.5 bits (63), Expect = 0.33
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 15 QELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVC 54
+E EI MYN ++ C KC+ + Y G ++ C
Sbjct: 73 KEEEICKSQGMYNSTMACCSNKCVDLAYDNDNCGACKNQC 112
>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 673
Score = 28.3 bits (60), Expect = 0.75
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 18 EIEMMSDMYNRLVSACHRKCIP-IKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNM 76
EIE +Y R V CH K I+Y + E+ +G V L R +V+ER KL+N
Sbjct: 194 EIERARSIYERFV-LCHPKVSAFIRYAKFEMKRGGQVKLAR------EVYERAVDKLAND 246
Query: 77 SQGE 80
+ E
Sbjct: 247 EEAE 250
>At3g02710.1 68416.m00262 nuclear associated protein-related /
NAP-related similar to Nuclear associated protein (NAP)
(NYD-SP19) (Swiss-Prot:Q8WYA6) [Homo sapiens]
Length = 529
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 14 VQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKL 73
++E I +++ ++ ++ R + K+ E E K +DR + YL +R+ +
Sbjct: 375 LEERVISLIASLFAGILRGSRRDRLLSKFVENEFEK-----IDRLMELYLRYSDRVRSEA 429
Query: 74 SNMSQGETEDL 84
+ Q E +DL
Sbjct: 430 ERLDQLELDDL 440
>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
musculus [SP|P70704]; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1218
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 57 RCVAKYLDVHERIGKKLSNMSQGETED 83
R AK + ++ KK SNMSQ T+D
Sbjct: 1185 RVDAKIRHLRSKLNKKQSNMSQFSTQD 1211
>At1g04900.1 68414.m00487 expressed protein contains Pfam PF02636:
Uncharacterized ACR, COG1565
Length = 442
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 5 QLDPAKLQLVQEL-EIEMMSDMYNRLVSACHRKCIPIKYHEPE 46
QL P LV+ E E +S++Y L ++CI I HE +
Sbjct: 232 QLSPWMEVLVENKPESEALSELYKPLEDPLIKRCIEIVEHEDD 274
>At5g46600.1 68418.m05737 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005;
expression supported by MPSS
Length = 539
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 49 KGESVCLDRCVAKYLDVHERIGKKLSNMSQGETEDL 84
+G S C++ CV++Y + E++ ++ S+ + EDL
Sbjct: 227 QGLSRCIEACVSEYFE--EKLKDNETSDSESDDEDL 260
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/55 (29%), Positives = 20/55 (36%)
Query: 29 LVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMSQGETED 83
L +AC R H +G L V+ L E GK L N E E+
Sbjct: 1851 LYAACCRLLYTAVKHHKSQTEGSIATLQESVSALLHCLETAGKNLGNCVSWEVEE 1905
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 6 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVC 54
L+ KL +LE E D N+L ++ +CI I + + + E VC
Sbjct: 671 LEAKKLVDSLKLEAEAARDNENKLQTSLVERCIEIDRAKSRIEELEKVC 719
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,442
Number of Sequences: 28952
Number of extensions: 83457
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 12
length of query: 93
length of database: 12,070,560
effective HSP length: 69
effective length of query: 24
effective length of database: 10,072,872
effective search space: 241748928
effective search space used: 241748928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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