Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
(93 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 84 3e-18
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha... 38 2e-04
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 36 7e-04
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 31 0.037
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 29 0.086
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 27 0.60
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 0.80
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ... 25 1.8
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 25 1.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 2.4
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 24 3.2
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 24 4.3
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 5.6
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 23 5.6
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 23 7.4
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 23 9.8
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 23 9.8
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 23 9.8
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 23 9.8
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 84.2 bits (199), Expect = 3e-18
Identities = 33/73 (45%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 6 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDV 65
++P + + ++ E+EMMSD++NRLV CH+KCI KY+E +L KGESVC+DRCV+KY +
Sbjct: 13 INPQNIAMAEQ-EVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEA 71
Query: 66 HERIGKKLSNMSQ 78
++ + + + Q
Sbjct: 72 NQSLSQHMQKRGQ 84
>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
Tim9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 84
Score = 38.3 bits (85), Expect = 2e-04
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 12 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGK 71
Q+++ +++ +MY+ L C C+ + +L ES C+ +C K+L ER+G+
Sbjct: 14 QVLEAKQLKEYLNMYSTLTQNCFSDCVQ-DFTSSKLSNKESECIAKCADKFLKHSERVGQ 72
Query: 72 KLSNMS 77
+ + +
Sbjct: 73 RFAEFN 78
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 36.3 bits (80), Expect = 7e-04
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 12 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEP--ELGKGESVCLDRCVAKYLDVHERI 69
Q+ QEL + ++ +++ C KCIP EP E C+ +C+ +Y+D +
Sbjct: 24 QIRQELAVAQAGELISKINENCFDKCIP----EPGSTFDPNEKSCVSKCMERYMDAWNIV 79
Query: 70 GKKLSNMSQGETEDL 84
+ + Q E ++L
Sbjct: 80 SRTYISRMQREQKNL 94
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 30.7 bits (66), Expect = 0.037
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 5 QLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLD 64
QL+ +K ++ ++++ ++ + S C KCI ++ L K E CL CV ++LD
Sbjct: 17 QLELSKFIESEQQKVKLQQAIH-QFTSTCWPKCIGNIGNK--LDKSEEQCLQNCVERFLD 73
Query: 65 VHERIGKK 72
+ I K+
Sbjct: 74 CNFHIIKR 81
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 29.5 bits (63), Expect = 0.086
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 3 VPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKY 62
+P ++ ++ ++ ++ +SDM V A IP++Y +P L G+ C + Y
Sbjct: 78 LPTINMGRMTMLDAIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGK--CSGLTITAY 135
Query: 63 LDVHERIGKKLSNMSQGET 81
H G S + + E+
Sbjct: 136 NAGHTLGGTLWSLIKESES 154
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 0.60
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 41 KY-HEPELGKGESVCLDRCVAKYLDVHERIGKKLSN 75
KY + P + ES+C C A + DV+ER+GK L N
Sbjct: 135 KYGNSPRVDSRESLCEWICEA-HNDVNERLGKPLFN 169
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 0.80
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 43 HEPELGKGESVCLDRCVAKYLDVHERIGKKLSNM----SQGETEDLTKVNIPDK 92
H+PE + L AK VHE++ K+ SQG L + IP K
Sbjct: 47 HDPEFANSFNKMLKSFEAKMQLVHEKLAKRFQEAVVLPSQGNFTQLEALFIPSK 100
>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 179
Score = 25.0 bits (52), Expect = 1.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 64 DVHERIGKKLSNMSQGETEDLTKVNIP 90
++HER+GK+L +G+ + + N P
Sbjct: 111 EIHERLGKQLLEKEEGKEKTREESNPP 137
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 1.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 48 GKGESVCLDRCVAKYLDVHERIGKKLSNMSQGETEDLTKVNIPD 91
G GES+ K L V + KKL ++ GE D T PD
Sbjct: 110 GDGESIIDGLGETKPLTVDRLVHKKLRWVTLGEQYDWTTKEYPD 153
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 24.6 bits (51), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MAVPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCI 38
+ V ++D KL+ + L IE + + +V ACH K +
Sbjct: 1937 LKVQKIDFEKLK--ETLTIEQLKEQLTDIVEACHAKTL 1972
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 3.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 63 LDVHERIGKKLSNMSQGETEDLTKVNIP 90
LD++E+IGK +M Q + + + IP
Sbjct: 680 LDLNEKIGKFPISMFQNQVAQFSTIEIP 707
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 23.8 bits (49), Expect = 4.3
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 42 YHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMSQGETEDLTKVNIPDKK 93
Y + G+ L +C+ K ++ K N+ + KVN+ DK+
Sbjct: 4 YKKKNFGRRSVYNLKKCLHKGFQINSCNIKAADNVLHSKASAFEKVNVVDKE 55
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.4 bits (48), Expect = 5.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 43 HEPELGKGESVCLDRCVAKYL 63
+EPE+ K S +++ +A+YL
Sbjct: 284 NEPEISKSVSTSVEQSIAEYL 304
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 5.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 55 LDRCVAKYLDVHERIGKKLSNMSQGETEDLTKV 87
LD V KY D H KLS +S T L+KV
Sbjct: 26 LDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKV 58
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 23.0 bits (47), Expect = 7.4
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 15 QELEIEMMSDMYNRLVSACHRKCIPIKYHE 44
+ LE+++++D Y +S R C + H+
Sbjct: 307 RHLEVQILADQYGNNISLFGRDCSVQRRHQ 336
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 22.6 bits (46), Expect = 9.8
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 60 AKYLDVHERIGKKLSNMSQGETEDLTKVNIPD 91
+KY+D+ ++I + SN+ + DL + + D
Sbjct: 54 SKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 22.6 bits (46), Expect = 9.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 69 IGKKLSNMSQGETEDLTKVNIPDKK 93
+GK S +SQ + +DL + DKK
Sbjct: 1 MGKSQSKLSQDQLQDLVRSTRFDKK 25
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 22.6 bits (46), Expect = 9.8
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 42 YHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMSQGETEDLT 85
YHE E G + L R + Y +H R S + + + T
Sbjct: 115 YHEYEEGTSGNSPLRRAIGSYDFLHPRPSGNSSRLDRNSSRPFT 158
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 22.6 bits (46), Expect = 9.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 1 MAVPQLDPAKLQLVQELE 18
+AV +L+PAKL QE+E
Sbjct: 310 LAVGKLNPAKLANFQEIE 327
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,070
Number of Sequences: 5004
Number of extensions: 15172
Number of successful extensions: 43
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 19
length of query: 93
length of database: 2,362,478
effective HSP length: 62
effective length of query: 31
effective length of database: 2,052,230
effective search space: 63619130
effective search space used: 63619130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)
- SilkBase 1999-2023 -