Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
(93 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0836 + 23550376-23550470,23551617-23551803 48 1e-06
08_02_1396 - 26742694-26742915,26743736-26743771 42 9e-05
05_01_0085 - 568015-568204,568286-568365 31 0.094
02_05_0323 - 27928385-27928534,27930326-27930430 31 0.16
07_01_0952 - 8005633-8005687,8006357-8006395,8006668-8006720,800... 29 0.66
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 25 6.1
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 25 6.1
05_04_0035 + 17378541-17381276 25 8.1
05_03_0258 - 11153709-11156090 25 8.1
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 25 8.1
>12_02_0836 + 23550376-23550470,23551617-23551803
Length = 93
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 3 VPQLDPAKLQ-LVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAK 61
+P+ D ++ +V +L+I MYN LV C C+ + L K E C+ RC K
Sbjct: 12 LPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDT-FRRKTLDKQEESCVRRCAEK 70
Query: 62 YLDVHERIGKKLSNMSQG 79
+L R+G + + ++QG
Sbjct: 71 FLKHSMRVGMRFAELNQG 88
>08_02_1396 - 26742694-26742915,26743736-26743771
Length = 85
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 11 LQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIG 70
+ L QE + M+S+M +L S C KCI + GE+ CL C ++LD+ I
Sbjct: 21 ITLQQEQQKAMVSEMVGKLTSVCWDKCI-TSTPGSKFSSGETTCLTNCAQRFLDMSVIIA 79
Query: 71 KK 72
K+
Sbjct: 80 KR 81
>05_01_0085 - 568015-568204,568286-568365
Length = 89
Score = 31.5 bits (68), Expect = 0.094
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 7 DPAKLQLVQE-LEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYL 63
D A+++ V + L+ +YN + C C+ Y LGK E C+ CV K+L
Sbjct: 11 DKARMEAVADKLQTRDAIRLYNWVSHRCFSDCVTTFYRRT-LGKKEEDCVRSCVRKFL 67
>02_05_0323 - 27928385-27928534,27930326-27930430
Length = 84
Score = 30.7 bits (66), Expect = 0.16
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 6 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDV 65
+D K QL Q E + + N+ C KC+ L ES C+ RCV +Y++
Sbjct: 18 MDQIKAQLAQAYAQEFLETVGNK----CFAKCVTKP--GSSLSGSESSCISRCVDRYIEA 71
Query: 66 HERIGKKL 73
+ + L
Sbjct: 72 TGIVSRAL 79
>07_01_0952 -
8005633-8005687,8006357-8006395,8006668-8006720,
8007868-8007930
Length = 69
Score = 28.7 bits (61), Expect = 0.66
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 16 ELEIEMMSDMYNRLVSACHRKCI 38
E E+E D++NRL C KCI
Sbjct: 27 EKEMEYRVDLFNRLTQTCFSKCI 49
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 15 QELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLD-VHERIGKKL 73
+ LE++++ D Y + + R C + H+ + +G R K L+ R+ K +
Sbjct: 455 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQAARRLAKAV 514
Query: 74 SNMSQGETEDL 84
+ E L
Sbjct: 515 GYVGAATVEYL 525
>03_02_0080 +
5498638-5498699,5499121-5499190,5499551-5500711,
5500940-5501029,5501147-5501464
Length = 566
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 52 SVCLDRCVAKYLDVHERIGK 71
+V RC A+YL++HE + K
Sbjct: 98 NVIAARCAAEYLEMHETVDK 117
>05_04_0035 + 17378541-17381276
Length = 911
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 19 IEMMSDMYNRLVSACHRKCIPIKYHE 44
I + S+ YN +V+ C +KC K+HE
Sbjct: 361 IGINSESYNVMVNQCFKKC---KFHE 383
>05_03_0258 - 11153709-11156090
Length = 793
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 19 IEMMSDMYNRLVSA---CHRKCIPIKYHEPELGKGESVCL 55
+E+ D YN L+SA C + K ++ + G + CL
Sbjct: 457 VELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCL 496
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 57 RCVAKYLDVHERIGKKLSNMSQGE-TEDLTKVNI 89
R + +YL+++E G S++ QG+ TED + V++
Sbjct: 196 RKIKRYLELYESTGALPSDLFQGQATEDRSGVDL 229
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,900
Number of Sequences: 37544
Number of extensions: 98358
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 10
length of query: 93
length of database: 14,793,348
effective HSP length: 70
effective length of query: 23
effective length of database: 12,165,268
effective search space: 279801164
effective search space used: 279801164
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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