Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
(93 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55628| Best HMM Match : zf-Tim10_DDP (HMM E-Value=3.2e-27) 116 3e-27
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.006
SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28) 30 0.30
SB_38826| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 0.90
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 0.90
SB_34418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 0.90
SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14) 26 3.7
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 25 6.4
>SB_55628| Best HMM Match : zf-Tim10_DDP (HMM E-Value=3.2e-27)
Length = 89
Score = 116 bits (278), Expect = 3e-27
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 6 LDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDV 65
+DPAK Q+V +LEIEMM+D+YNRL AC +KCI KY E +L KGESVCLDRCVAKYL++
Sbjct: 1 MDPAKAQMVADLEIEMMTDLYNRLTVACQKKCISPKYKEGDLTKGESVCLDRCVAKYLEI 60
Query: 66 HERIGKKLSNMS 77
HERIGKKL++MS
Sbjct: 61 HERIGKKLTSMS 72
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 35.5 bits (78), Expect = 0.006
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 1 MAVPQLDPAKLQLVQ-ELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCV 59
M+ Q DP Q++Q E E + + L C KC+ K + GK E+ CL CV
Sbjct: 1 MSSLQGDPQLQQMLQIEGEKAKFQTIVHSLTEMCWEKCVD-KPGQKLDGKTET-CLANCV 58
Query: 60 AKYLDVHERIGKKLSNMS 77
++LD + ++L NM+
Sbjct: 59 NRFLDTSNMLVQRLDNMA 76
>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
Length = 143
Score = 29.9 bits (64), Expect = 0.30
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 5 QLDPAKLQ--LVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKY 62
Q+DPA Q +++E + + ++ + C KC+ ++ + GK E+ CL CV ++
Sbjct: 65 QIDPALRQELMIEEQKAKFQMQVH-KFTDTCWDKCMDKPGNKLD-GKTET-CLVNCVERF 121
Query: 63 LDVHERIGKKLSNMSQ 78
+D I K+ + Q
Sbjct: 122 IDTTLLITKRFGELVQ 137
>SB_38826| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 505
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 42 YHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMSQGETEDLTKVN 88
YH+P + +C++ KY E + K+ ++ +G + + VN
Sbjct: 80 YHKPGKSINDHLCIEESSTKYTQESEELDKRQRHLKKGVSSVTSVVN 126
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 0.90
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 10 KLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERI 69
++Q V+ELE ++ +D+ NRL++ + HE +L K + KY D +
Sbjct: 338 EMQHVRELE-QLTADIENRLLTRDGKHA----QHEKDLEKQFLELRQKLEGKYYDELDST 392
Query: 70 GKKLSNMSQGETEDLTK 86
K L + Q + ED+ +
Sbjct: 393 VKNLQDRYQNDLEDILR 409
>SB_34418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.3 bits (60), Expect = 0.90
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 9 AKLQLVQELEIEMMSDMYNRL-VSACHRKCIPIKYHEPELGKGESVCLDRCVAK---YLD 64
++L++ ++ E+ + + +RL +S CI +Y E+ K E VC+ R ++ Y D
Sbjct: 293 SRLEIYKDEEVCIAREECSRLKISTDEEVCIARQYSRLEIYKDEEVCIAREYSRLEIYKD 352
Query: 65 VHERIGKKLSNMSQGETEDL 84
I ++ S + + E++
Sbjct: 353 EEVCIAREYSRLKISKDEEV 372
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 9 AKLQLVQELEIEMMSDMYNRL-VSACHRKCIPIKYHEPELGKGESVCLDRCVAK--YLDV 65
++L++ ++ E+ + + Y+RL +S CI +Y E+ K E VC+ R ++ Y D
Sbjct: 345 SRLEIYKDEEVCIARE-YSRLKISKDEEVCIAREYSRLEIYKDEEVCIAREYSRLEYKDE 403
Query: 66 HERIGKKLSNMSQGETEDL 84
I ++ S + + E++
Sbjct: 404 EVCIAREYSRLKIYKDEEV 422
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 9 AKLQLVQELEIEMMSDMYNRL-VSACHRKCIPIKYHEPELGKGESVCLDRCVAK---YLD 64
++L++ ++ E+ + + YNRL + CI +Y E+ K E VC+ R ++ Y D
Sbjct: 21 SRLEIYKDEEVCIARE-YNRLEIYKDEEVCIAREYSRLEIYKDEEVCIAREYSRLEIYKD 79
Query: 65 VHERIGKKLSNMSQGETEDL 84
I ++ S + + E++
Sbjct: 80 EEVCIAREYSRLEIYKDEEV 99
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 9 AKLQLVQELEIEMMSDMYNRL-VSACHRKCIPIKYHEPELGKGESVCLDRCVAK---YLD 64
++L++ ++ E+ + + Y+RL + CI +Y E+ K E VC+ R ++ Y D
Sbjct: 89 SRLEIYKDEEVCIARE-YSRLEIYKDEEVCIAREYSRLEIYKDEEVCIAREYSRLEIYKD 147
Query: 65 VHERIGKKLSNMSQGETEDL 84
I ++ S + + ED+
Sbjct: 148 EEVCIAREYSRLEIYKDEDV 167
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 9 AKLQLVQELEIEMMSDMYNRL-VSACHRKCIPIKYHEPELGKGESVCLDRCVAK---YLD 64
++L++ ++ E+ + + YNRL + CI +Y E+ K E VC+ R ++ Y D
Sbjct: 480 SRLKICKDEEVCIARE-YNRLEIYKEEEVCIAREYSRLEIYKDEEVCIAREYSRLEIYKD 538
Query: 65 VHERIGKKLSNMSQGETEDL 84
I ++ S + + E++
Sbjct: 539 EEVCIAREYSRLKIYKDEEV 558
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 9 AKLQLVQELEIEMMSDMYNRL-VSACHRKCIPIKYHEPELGKGESVCLDR 57
++L++ ++ E+ + + YNRL + CI +Y+ E+ K E VC+ R
Sbjct: 548 SRLKIYKDEEVCIARE-YNRLKIYKDKEVCIAREYNRLEIYKDEEVCIVR 596
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 9 AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAK---YLDV 65
++L++ ++ E+ + + Y+RL CI +Y ++ K E VC+ R ++ Y D
Sbjct: 379 SRLEIYKDEEVCIARE-YSRLEYKDEEVCIAREYSRLKIYKDEEVCIAREYSRLEIYKDE 437
Query: 66 HERIGKKLSNMSQGETEDL 84
I ++ S + + E++
Sbjct: 438 EVCIAREYSRLKIYKDEEV 456
>SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)
Length = 443
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 54 CLDRCVAKYLDVHERIGKKLSNMSQ 78
C DR V +LD +R+ + SN++Q
Sbjct: 366 CYDRRVITFLDSEQRLSNQSSNLAQ 390
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 12 QLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGK 71
++ LE +M +Y+ AC +KC + + G + C A Y+ V + K
Sbjct: 248 KITSNLETPLMLSVYDWSSEACRKKCTNYELFGIVMHSGMTSCSGHYQA-YVKVRSNLTK 306
Query: 72 KLSN 75
+ N
Sbjct: 307 LVDN 310
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,518
Number of Sequences: 59808
Number of extensions: 112321
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 28
length of query: 93
length of database: 16,821,457
effective HSP length: 70
effective length of query: 23
effective length of database: 12,634,897
effective search space: 290602631
effective search space used: 290602631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -