GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
         (93 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical...   108   5e-25
AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc fi...   108   5e-25
AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp rel...    33   0.037
Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical pr...    29   0.46 
AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc fi...    29   0.46 
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    28   0.80 
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical...    25   5.6  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    25   9.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    25   9.8  
AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AL161712-17|CAC70139.1|   86|Caenorhabditis elegans Hypothetical
          protein Y66D12A.22 protein.
          Length = 86

 Score =  108 bits (260), Expect = 5e-25
 Identities = 47/79 (59%), Positives = 62/79 (78%)

Query: 9  AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 68
          A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5  AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 69 IGKKLSNMSQGETEDLTKV 87
          +GK+L++MSQG+   L K+
Sbjct: 65 LGKRLTSMSQGDEAALQKI 83


>AF150094-1|AAD40000.1|   86|Caenorhabditis elegans small zinc
          finger-like protein protein.
          Length = 86

 Score =  108 bits (260), Expect = 5e-25
 Identities = 47/79 (59%), Positives = 62/79 (78%)

Query: 9  AKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHER 68
          A++  V ELE+EMMSDMY R+ ++C  KCI   + E EL KGE+VCLDRCVAKYLDVHE+
Sbjct: 5  AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 69 IGKKLSNMSQGETEDLTKV 87
          +GK+L++MSQG+   L K+
Sbjct: 65 LGKRLTSMSQGDEAALQKI 83


>AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp
          related protein 1 protein.
          Length = 83

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 2  AVPQLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGES-VCLDRCVA 60
          A PQL+    QL  E + +  ++  + L   C   C    Y  P    G++  C+  CV 
Sbjct: 4  ADPQLNRFLQQLQAETQRQKFTEQVHTLTGRCWDVCFA-DYRPPSKMDGKTQTCIQNCVN 62

Query: 61 KYLDVHERIGKKLSNMSQG 79
          + +D    + + LS M+ G
Sbjct: 63 RMIDASNFMVEHLSKMNGG 81


>Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical
          protein DY3.1 protein.
          Length = 108

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 15 QELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLS 74
          Q+  +    ++   +   C  KCI        L  GE  CL RC+ ++++    + + L 
Sbjct: 27 QQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCMDRFMESWNLVSQTLQ 84

Query: 75 NMSQGE 80
             Q E
Sbjct: 85 KRLQEE 90


>AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc
          finger-like protein protein.
          Length = 108

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 15 QELEIEMMSDMYNRLVSACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLS 74
          Q+  +    ++   +   C  KCI        L  GE  CL RC+ ++++    + + L 
Sbjct: 27 QQAALANAQNLVTDISEKCTNKCITAP--GSSLASGEKQCLQRCMDRFMESWNLVSQTLQ 84

Query: 75 NMSQGE 80
             Q E
Sbjct: 85 KRLQEE 90


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 7   DPAKL--QLVQELEIEMMSDMYNRLVSACHRKCIPIKY 42
           DP  L  QLV   E EM    Y +L   C+ KC+ + Y
Sbjct: 600 DPVILDKQLVDFSEYEMARKRYAQLFQDCNEKCVRVDY 637


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 14  VQELEIEMMSDMYNRLVSACHRKCIPIKY 42
           +++   E+M + Y +L   C+ KC+ + Y
Sbjct: 593 IEQTRYELMRERYGQLEKDCNGKCVLVDY 621


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 7/34 (20%)

Query: 32  ACHRKCIPIKYHE-------PELGKGESVCLDRC 58
           AC+ +C+P+ +H+        +  KG++VC D C
Sbjct: 77  ACYEECLPLDHHKCPAASKIHKTTKGKTVCNDDC 110


>AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical
           protein Y24F12A.1 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 16  ELEIEMMSDMYNRLVSACHRKCIPIKYH--EPELGKGESVCLDRCVAKYLDVHERIGK 71
           E E+E+  D++ + V+   +  +P+  H      G+ E  CL + + K +DV+ +  K
Sbjct: 268 ESELEVQKDVFEKHVALAFKFKLPLVIHCRNGSKGRAEEECL-QILKKKMDVNHKFLK 324


>Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical
           protein F14B6.5 protein.
          Length = 672

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 5   QLDPAKLQLVQELEIEMMSDMYNRLVSACHRKCIPIKY 42
           +L  +  QL+     E+    Y++LV+ C  +C+ + Y
Sbjct: 587 RLGQSNAQLIDGSSYELARRRYSQLVADCDGRCVLLDY 624


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 75   NMSQGETEDLTKVNIPDK 92
            N+ +G TED TKV  PD+
Sbjct: 2306 NIRKGTTEDFTKVEWPDE 2323


>Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical
           protein F55A11.11 protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 63  LDVHERIGKKLSNMSQGETEDLT 85
           +DV  +IG+    +S G TEDLT
Sbjct: 228 MDVASKIGQHGDMLSSGHTEDLT 250


>AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical
           protein Y73F8A.11 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 29  LVSACHRKCIPIKYHEPE 46
           +V  CH  C P+K  EP+
Sbjct: 319 IVDTCHDSCPPLKLDEPD 336


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 32   ACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMS 77
            A    C P+ + EPE  K     +   +AK  D   ++ + L N+S
Sbjct: 3295 AAFASCFPVAFLEPEFNKSNKFSV---LAKSQDQSVQVQEMLQNLS 3337


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 32   ACHRKCIPIKYHEPELGKGESVCLDRCVAKYLDVHERIGKKLSNMS 77
            A    C P+ + EPE  K     +   +AK  D   ++ + L N+S
Sbjct: 3307 AAFASCFPVAFLEPEFNKSNKFSV---LAKSQDQSVQVQEMLQNLS 3349


>AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical
           protein Y32F6B.1 protein.
          Length = 758

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 4   PQLDPAKLQLVQELEIEMMSDMYNRLVSACH 34
           P +DP K Q+V   E +  SD+  + V  CH
Sbjct: 136 PLIDP-KNQVVMNYEGDEKSDLLQKYVEYCH 165


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,417
Number of Sequences: 27539
Number of extensions: 85553
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 16
length of query: 93
length of database: 12,573,161
effective HSP length: 69
effective length of query: 24
effective length of database: 10,672,970
effective search space: 256151280
effective search space used: 256151280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)