GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000106-TA|BGIBMGA000106-PA|IPR004217|Zinc finger,
Tim10/DDP-type
         (93 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   0.48 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   5.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase
          domain protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 0.48
 Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 15 QELEIEMMSDMYNRLVSACHRKCI-PIKYHEPE 46
          +E+E E++ D Y+  ++ C+ + + P+  H  E
Sbjct: 41 KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGE 73


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 50  GESVCLDRC 58
           GE VCL+ C
Sbjct: 160 GEEVCLENC 168


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,294
Number of Sequences: 429
Number of extensions: 994
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 93
length of database: 140,377
effective HSP length: 48
effective length of query: 45
effective length of database: 119,785
effective search space:  5390325
effective search space used:  5390325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)