GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000105-TA|BGIBMGA000105-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (113 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   2.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   3.0  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   4.0  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   4.0  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   5.2  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   6.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 4   CSNIMTYFDKIKGFKVPC 21
           C N  T  DK+ GF+  C
Sbjct: 269 CHNNGTCLDKVGGFECKC 286


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 17  FKVPCYHSCDLPE 29
           FK P YH+ D+ E
Sbjct: 305 FKAPRYHTLDITE 317


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 95  MDNDMLVTNGHYQHI 109
           MD D L+T   Y H+
Sbjct: 136 MDIDSLITKWRYNHV 150


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 95  MDNDMLVTNGHYQHI 109
           MD D L+T   Y H+
Sbjct: 296 MDIDSLITKWRYNHV 310


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 95  MDNDMLVTNGHYQHI 109
           MD D L+T   Y H+
Sbjct: 296 MDIDSLITKWRYNHV 310


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 73   VGYSVANSDNFY 84
            VGY +ANSD  Y
Sbjct: 1033 VGYRLANSDKPY 1044



 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 25  CDLPEFIEKNKRCENYHGVEG 45
           C++P F+    R E + G +G
Sbjct: 144 CNIPSFVADFVRVEAWVGSDG 164


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 23  HSCDLPEFIE 32
           HSCD PE ++
Sbjct: 139 HSCDWPENVD 148


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.141    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,000
Number of Sequences: 317
Number of extensions: 1327
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 113
length of database: 114,650
effective HSP length: 49
effective length of query: 64
effective length of database: 99,117
effective search space:  6343488
effective search space used:  6343488
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)