GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000105-TA|BGIBMGA000105-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   2.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   2.9  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    24   5.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   5.1  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    23   8.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   8.9  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    23   8.9  

>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 56  LIGVATWGAYYPKYELPVGYSVANSDNFYA 85
           LIG+  +   Y   E+ V Y VA S N YA
Sbjct: 117 LIGIMMFFVIYALGEMAVAYPVAGSFNTYA 146


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 3   LCSNIMTYFDKIKGFKVPCYHSCDLPEFIEKN--KRCENYHGVEGGAVFDKKK 53
           L ++I+   D ++   +P  H+ ++PEF++    +R + +  ++     DK K
Sbjct: 459 LQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVK 511


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 56  LIGVATWGAYYPKYELPVGYSVANSDNFYA 85
           LIG+      Y   EL + Y VA S N YA
Sbjct: 117 LIGIMMIFVIYALGELAIAYPVAGSFNTYA 146


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 97  NDMLVTNGHYQHICDFF 113
           ND+  T  H++H+C  F
Sbjct: 956 NDIYYTARHFEHVCPMF 972


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 56  LIGVATWGAYYPKYELPVGYSVANSDNFYA 85
           LIG+  +   Y   E+ V Y VA   N YA
Sbjct: 117 LIGIMMFFIVYALGEMAVAYPVAGGFNTYA 146


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 75  YSVANSDNFYADYMCAKR 92
           YS+  S  FY DY+ A +
Sbjct: 781 YSILGSRKFYGDYLSASK 798


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 51  KKKNQLIGVATWGAYYPKYELPVGYSVANSDN 82
           K  N + G   WG Y    + P G+++  S N
Sbjct: 242 KNHNFVKGTKIWGDYINTTQWPTGFAILLSFN 273


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.141    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,016
Number of Sequences: 5004
Number of extensions: 25403
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 2,362,478
effective HSP length: 64
effective length of query: 49
effective length of database: 2,042,222
effective search space: 100068878
effective search space used: 100068878
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)