GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000105-TA|BGIBMGA000105-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (113 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0804 + 32118107-32118541                                         27   2.6  
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367...    27   3.5  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    26   6.1  
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073...    26   6.1  
05_04_0084 - 17788077-17789240                                         26   8.0  
02_05_1092 - 34049640-34049934,34050013-34050147,34050229-340503...    26   8.0  

>01_06_0804 + 32118107-32118541
          Length = 144

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 6/32 (18%)

Query: 16  GFKVPCYHSCDLPEFIEKN------KRCENYH 41
           G + PCYH  D P+F  K        RCE ++
Sbjct: 86  GDRPPCYHKLDFPKFDRKGDPIHFLNRCEQFY 117


>07_01_0488 -
           3678329-3678577,3678769-3678810,3678891-3678944,
           3679149-3679212,3679316-3679410,3679477-3679584,
           3679679-3679752,3680338-3680410,3680539-3680586,
           3680694-3680877,3681262-3681440,3682167-3682259,
           3682738-3682851,3683570-3683644,3683852-3684112,
           3684821-3684934,3685473-3685529,3686668-3686863,
           3686922-3686986,3687112-3687195,3688155-3688223,
           3688545-3688844
          Length = 865

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 34  NKRCENYHGVEGGAVFDKKKNQLIGVATWGAYYPKYELPVGYSVANSDNFYADY 87
           N +C       G A+F + + Q + V T G Y     +        S +FY  Y
Sbjct: 424 NSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQY 477


>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
            29415293-29415416,29416340-29416590,29416923-29418449,
            29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 10   YFDKIKGFKVPCYHSCDLPEFIEKNKRCENYHGVEGGAVFDKKKN 54
            YF K+ G  +PC+H C L E +    R  N    E   +F +  N
Sbjct: 1204 YFGKVGG--IPCHHECILDEELGLACRLCNVVCTEAKDIFPEMFN 1246


>03_06_0557 +
           34704990-34705400,34706271-34706485,34707142-34707367,
           34707447-34707532,34708030-34708121,34708232-34708471,
           34709455-34709750
          Length = 521

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 64  AYYPKYELPVGYSVANSDNFYADYMCAKRIKMDND 98
           A+YP Y +P G ++ + D  +  + C      D+D
Sbjct: 312 AWYPIYRIPTGPTLEDLDACFLTFHCLATPSKDSD 346


>05_04_0084 - 17788077-17789240
          Length = 387

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 25  CDLPEFIEKNKRCENYHGVEGGAVFDKKKNQ 55
           C  PEF+ K KR +   G +G  V  K+K +
Sbjct: 186 CTRPEFLNKPKREKGKKGKKGKDVGKKRKRE 216


>02_05_1092 -
           34049640-34049934,34050013-34050147,34050229-34050305,
           34050541-34050624,34050699-34050849,34050944-34051060,
           34051162-34051219,34051412-34051502,34051601-34051648,
           34051724-34051792,34051881-34051904,34052125-34052233,
           34052338-34052375,34052524-34052672,34052765-34052780
          Length = 486

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 19  VPCYHSCDLPEFIEKNKRCEN 39
           VP Y SC  P   + NKRC N
Sbjct: 184 VPSYTSCHEPPQDKTNKRCTN 204


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.141    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,717,108
Number of Sequences: 37544
Number of extensions: 144659
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 14,793,348
effective HSP length: 73
effective length of query: 40
effective length of database: 12,052,636
effective search space: 482105440
effective search space used: 482105440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)