GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000105-TA|BGIBMGA000105-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (113 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)         28   2.1  
SB_21988| Best HMM Match : DNA_primase_S (HMM E-Value=0.0096)          26   6.3  

>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 2   DLCSNIMTYFDKIKGFKVPCYHSCD 26
           D+C N+    DK+KG K      CD
Sbjct: 167 DVCGNVRGTLDKLKGIKSDLVRGCD 191


>SB_21988| Best HMM Match : DNA_primase_S (HMM E-Value=0.0096)
          Length = 153

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 22  YHSCDLPEFIEKNKRCENYHGVEGGAVFDKKKNQLIGV 59
           Y S    E +EK  +  N H ++ GAVF  KK Q + V
Sbjct: 80  YQSFASQEEMEKEIQKRNPHKIDIGAVFSHKKMQSMEV 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,419,941
Number of Sequences: 59808
Number of extensions: 174620
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 2
length of query: 113
length of database: 16,821,457
effective HSP length: 73
effective length of query: 40
effective length of database: 12,455,473
effective search space: 498218920
effective search space used: 498218920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)