GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000105-TA|BGIBMGA000105-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (113 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   1.0  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AF024500-1|AAB70364.1|  339|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z81071-9|CAI79242.1|  177|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    27   3.1  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    27   3.1  
AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical ...    27   3.1  
L10986-5|AAR25647.1|  171|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    26   7.2  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    26   7.2  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    26   7.2  
AL132948-42|CAC51060.2|  887|Caenorhabditis elegans Hypothetical...    26   7.2  
AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans alkyl-dihydro...    26   7.2  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    26   7.2  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      26   7.2  
AC024801-10|AAK68514.1|  597|Caenorhabditis elegans Alkyl-dihydr...    26   7.2  
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 39  NYHGVEGGAVFDKKKNQLIGVATWGAYYPKYELPV 73
           N HG+E  A   KK+ Q+   A  G+   KYE+ V
Sbjct: 786 NRHGIEADATSGKKEGQVTIQAQAGSLSTKYEITV 820


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 17  FKVPCYHSCDLPEFIEKNKRC---ENYHG 42
           F VPC  + +  E IE N +C   + YHG
Sbjct: 884 FSVPCSRNAECVESIESNPKCVCRKGYHG 912


>AF024500-1|AAB70364.1|  339|Caenorhabditis elegans Hypothetical
           protein K06H6.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 10  YFDKIK-GFKVPCYHSCDLPEFIEKN 34
           YFD +  GF++P  +S DLPE+  +N
Sbjct: 314 YFDYVAFGFEIPEVYSADLPEYPLRN 339


>Z81071-9|CAI79242.1|  177|Caenorhabditis elegans Hypothetical
          protein F28F8.9 protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 6  NIMTYFDKIKGFKVPCYHSCDLPEFIEK-NKRC 37
          N+  YF  +K FK+P        EF E   KRC
Sbjct: 28 NVKKYFKNVKSFKIPKIEKRKAEEFDEPCRKRC 60


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8 protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 23  HSCDLPEFIEKNKRCENYHGVEGGAVFDKKKNQLIGVATWGAYYPKYELPVGYSVANSDN 82
           H  +L    EKNK  E  H      +FD+ + +LI V    A Y    L          N
Sbjct: 812 HEEELKNVAEKNKTGEGNHIGRQSEIFDEMREELINVC---ALYSAKCLENSQLDEQLSN 868

Query: 83  FYADYMCAKRIKMDNDML 100
             ++   +  + ++ND L
Sbjct: 869 LISEKEASVELSIENDKL 886


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8 protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 23  HSCDLPEFIEKNKRCENYHGVEGGAVFDKKKNQLIGVATWGAYYPKYELPVGYSVANSDN 82
           H  +L    EKNK  E  H      +FD+ + +LI V    A Y    L          N
Sbjct: 812 HEEELKNVAEKNKTGEGNHIGRQSEIFDEMREELINVC---ALYSAKCLENSQLDEQLSN 868

Query: 83  FYADYMCAKRIKMDNDML 100
             ++   +  + ++ND L
Sbjct: 869 LISEKEASVELSIENDKL 886


>AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK697.2 protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 50  DKKKNQLIGVATWGAYYPKYELPVGYSVANSDNFYADYMCAKRIKMDNDML 100
           +K+ + +  +A+   YY   + P+  +  +S+++Y     AK +K+D+D++
Sbjct: 86  NKRSSPVDVIASTSDYYDPLQFPIQSTSQSSESYYPP---AKSMKIDDDLM 133


>L10986-5|AAR25647.1|  171|Caenorhabditis elegans Hypothetical
          protein F10E9.5 protein.
          Length = 171

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 21 CYHSCDLPEFIEKNKRCENYHGVE 44
          C+   + PE IE+  RCE Y  +E
Sbjct: 55 CFSDSEEPEVIERLSRCEIYSEIE 78


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 26  DLPEFIEKNKRCENYHGVE 44
           DLP  +E +KRC N+ G E
Sbjct: 423 DLPAAVEVDKRCANWDGDE 441


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 26  DLPEFIEKNKRCENYHGVE 44
           DLP  +E +KRC N+ G E
Sbjct: 423 DLPAAVEVDKRCANWDGDE 441


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 26  DLPEFIEKNKRCENYHGVE 44
           DLP  +E +KRC N+ G E
Sbjct: 458 DLPAAVEVDKRCANWDGDE 476


>AL132948-42|CAC51060.2|  887|Caenorhabditis elegans Hypothetical
           protein Y39B6A.47 protein.
          Length = 887

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 39  NYHGVEGGAVFDKKKNQLIGVATWGAYYPKYELPV 73
           N HG++  A   KK+ Q+   A  G+   KYE+ V
Sbjct: 477 NRHGIDTDASSGKKEGQVTIQAQAGSLSTKYEITV 511


>AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans
           alkyl-dihydroxyacetonephosphatesynthase protein.
          Length = 597

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 11/57 (19%)

Query: 2   DLCSNIMT-YFDKIKGFKVP--CYHSC-------DLPEFIEK-NKRCENYHGVEGGA 47
           DL S++   Y    KGFKV   C  +C       ++ +  E+ NK  E +HGV GGA
Sbjct: 371 DLKSSVSKMYITSWKGFKVDEICAATCVYEGNREEVDQHEERLNKLAEQFHGVVGGA 427


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 26  DLPEFIEKNKRCENYHGVE 44
           DLP  +E +KRC N+ G E
Sbjct: 423 DLPAAVEVDKRCANWDGDE 441


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 26  DLPEFIEKNKRCENYHGVE 44
           DLP  +E +KRC N+ G E
Sbjct: 423 DLPAAVEVDKRCANWDGDE 441


>AC024801-10|AAK68514.1|  597|Caenorhabditis elegans
           Alkyl-dihydroxyacetonephosphatesynthase protein 1
           protein.
          Length = 597

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 11/57 (19%)

Query: 2   DLCSNIMT-YFDKIKGFKVP--CYHSC-------DLPEFIEK-NKRCENYHGVEGGA 47
           DL S++   Y    KGFKV   C  +C       ++ +  E+ NK  E +HGV GGA
Sbjct: 371 DLKSSVSKMYITSWKGFKVDEICAATCVYEGNREEVDQHEERLNKLAEQFHGVVGGA 427


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 26  DLPEFIEKNKRCENYHGVEGGAVFDKKKNQL 56
           D+ + +E+ K+ +     E G +F KKKNQ+
Sbjct: 186 DIDQNVEELKKAQTLFN-ENGELFQKKKNQI 215


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.141    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,079
Number of Sequences: 27539
Number of extensions: 141739
Number of successful extensions: 259
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 17
length of query: 113
length of database: 12,573,161
effective HSP length: 72
effective length of query: 41
effective length of database: 10,590,353
effective search space: 434204473
effective search space used: 434204473
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)