GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000105-TA|BGIBMGA000105-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (113 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65160.1 68414.m07388 ubiquitin carboxyl-terminal hydrolase f...    29   0.96 
At5g63320.1 68418.m07946 expressed protein                             25   9.0  
At5g49270.1 68418.m06098 phytochelatin synthetase-related contai...    25   9.0  
At4g16100.1 68417.m02441 expressed protein                             25   9.0  
At3g49770.1 68416.m05442 hypothetical protein heat shock protein...    25   9.0  
At1g08080.1 68414.m00884 carbonic anhydrase family protein simil...    25   9.0  

>At1g65160.1 68414.m07388 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 309

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 41  HGVEGGAVFDKKKNQLIGVATWGAYYPKYEL 71
           H +E   VFD   N L  +  WG Y+  YE+
Sbjct: 76  HPLEANGVFDLFLNILEALPNWGLYFEVYEV 106


>At5g63320.1 68418.m07946 expressed protein
          Length = 569

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 31  IEKNKRCENYHGVEGGAVFDKKKNQLI 57
           +E+N+  +N  GV+G  V DK  N+ +
Sbjct: 509 VEENEAVDNGEGVQGTEVSDKGGNETV 535


>At5g49270.1 68418.m06098 phytochelatin synthetase-related
          contains Pfam PF04833: Phytochelatin synthetase-like
          conserved region
          Length = 663

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 2  DLCSNIMTYFDKIKGFKVPCYHSCDLP 28
          DLC+ I   +D I G K+P   + D P
Sbjct: 43 DLCNGIFLSYDFILGRKIPPNDTADQP 69


>At4g16100.1 68417.m02441 expressed protein
          Length = 207

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 64  AYYPKYELPVGYSVANSD 81
           A+YP Y +P+G S+ N D
Sbjct: 135 AWYPIYRIPLGQSLQNLD 152


>At3g49770.1 68416.m05442 hypothetical protein heat shock protein
           108 precursor, Gallus gallus, PIR:HHCH08
          Length = 223

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 10  YFDKIKGFKVPCYHSCDLPEFIEKNKRCENYHGVEGG 46
           Y++ +  F  P   S D  + +EK +R  N+HG++ G
Sbjct: 174 YYNALCDFVKPFPLSPDREKELEKLRRAINHHGIQLG 210


>At1g08080.1 68414.m00884 carbonic anhydrase family protein
          similar to storage protein (dioscorin) [Dioscorea
          cayenensis] GI:433463; contains Pfam profile PF00194:
          Eukaryotic-type carbonic anhydrase
          Length = 275

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 41 HG-VEGGAVFDKKKNQLIGVATWGAYYPKYEL 71
          HG VE    F+ KKN   G   WG   P++E+
Sbjct: 31 HGEVEDEREFNYKKNDEKGPERWGELKPEWEM 62


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.141    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,364
Number of Sequences: 28952
Number of extensions: 125857
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 12,070,560
effective HSP length: 72
effective length of query: 41
effective length of database: 9,986,016
effective search space: 409426656
effective search space used: 409426656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)