Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000104-TA|BGIBMGA000104-PA|IPR008968|Mu2 adaptin subunit
(AP50) of AP2, IPR001392|Clathrin adaptor complex, medium chain,
IPR011012|Longin-like
         (571 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   3.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   9.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   9.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 50  IDKHSGPDCGLF--KKQLVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG 107
           I  H+ PD  +    K L  + +T+   S + L S+ F +  K + + ++   PK  T  
Sbjct: 658 ISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVK-KDKDIILNVPKEST-- 714

Query: 108 RQHTFVETESVRYVYQPLDKLYMLLITTKASNI-LEDLETLRLFSRVVPEYCVQLTETE 165
              +   T +V Y+          L   +AS +    +++LRL     P Y ++LTE E
Sbjct: 715 --QSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPPYGMELTEAE 771


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 503 LVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALL 541
           LVS Q K  S E  +       FF   + WT   ++AL+
Sbjct: 266 LVSNQDKERSAEVRIAKVAFTIFFLFLLAWTPYATVALI 304


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 503 LVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALL 541
           LVS Q K  S E  +       FF   + WT   ++AL+
Sbjct: 266 LVSNQDKERSAEVRIAKVAFTIFFLFLLAWTPYATVALI 304


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 427 TTNDDKLAPLSVNCWPSEGVNGGCDVN 453
           TTND K+  + ++ W S   NG  +VN
Sbjct: 482 TTNDIKMQKVLIDFWVSFVNNGVPNVN 508


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 345 AGRDGDIQTFELSGLLTLRISNEQFGRI 372
           A +D DI TF +      RI +  FG+I
Sbjct: 83  AAKDADILTFVVPHQFIKRICSALFGKI 110


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 427 TTNDDKLAPLSVNCWPSEGVNGGCDVN 453
           TTND K+  + ++ W S   NG  +VN
Sbjct: 482 TTNDIKMQKVLIDFWVSFVNNGVPNVN 508


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,323
Number of Sequences: 429
Number of extensions: 6112
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 571
length of database: 140,377
effective HSP length: 61
effective length of query: 510
effective length of database: 114,208
effective search space: 58246080
effective search space used: 58246080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)