GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000104-TA|BGIBMGA000104-PA|IPR008968|Mu2 adaptin subunit
(AP50) of AP2, IPR001392|Clathrin adaptor complex, medium chain,
IPR011012|Longin-like
         (571 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   4.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   4.3  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   4.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   7.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   7.6  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   10.0 

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 300 FVSRLRSEGDVTAPVASAAQHDAGKPVPA 328
           FV +++ E D T+P+ +   + A  P P+
Sbjct: 4   FVRQVKQEADSTSPLLTPPHNPAYSPPPS 32


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 278 RDTRTVGRSAMKLGSRGTDADSFVSRLRSEGDVTAPVASAAQHDAGKPV 326
           R+   V  + +   + G D       L   G  T  +A  AQHD G PV
Sbjct: 231 REYENVNSTVVNWVNAGADPGKLTIGLAFYGH-TFQLADPAQHDLGAPV 278


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 449 GCDVNIEYELEQDHLVLTDVNITI 472
           GCD++I   + Q HL+L  V + +
Sbjct: 43  GCDLDIPNSVVQKHLILLMVLVNL 66


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 547 TQAEDGSPVDFSQEISFHADKYEFV 571
           T  E   PV  +  ISF  ++Y+FV
Sbjct: 372 TDGEPVHPVRVNTIISFSGERYDFV 396


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 547 TQAEDGSPVDFSQEISFHADKYEFV 571
           T  E   PV  +  ISF  ++Y+FV
Sbjct: 372 TDGEPVHPVRVNTIISFSGERYDFV 396


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 493 KGRNLIWSIPLVSKQQKTGSLEFTVTPSIP--NDFF 526
           K +NL++S  +V+  +KT S  F +  S+   ND F
Sbjct: 81  KAKNLLYSKQIVTILKKTKSNIFILKESVDTFNDIF 116


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,341
Number of Sequences: 317
Number of extensions: 4525
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 571
length of database: 114,650
effective HSP length: 60
effective length of query: 511
effective length of database: 95,630
effective search space: 48866930
effective search space used: 48866930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)