Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000104-TA|BGIBMGA000104-PA|IPR008968|Mu2 adaptin subunit
(AP50) of AP2, IPR001392|Clathrin adaptor complex, medium chain,
IPR011012|Longin-like
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 334 1e-91
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 293 2e-79
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 288 9e-78
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 167 3e-41
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 40 0.005
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 37 0.050
02_05_0615 - 30364956-30365729,30365813-30366286 33 0.81
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 32 1.4
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 30 4.3
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 30 4.3
07_01_1127 + 10456895-10457388,10457488-10458112 30 5.7
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746... 30 5.7
03_01_0217 - 1712979-1713794 30 5.7
01_06_0890 - 32750722-32750732,32750800-32750986 29 7.6
12_01_0662 + 5601147-5601176,5601419-5601517,5601601-5601651,560... 29 10.0
08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895 29 10.0
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711... 29 10.0
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 334 bits (820), Expect = 1e-91
Identities = 198/531 (37%), Positives = 300/531 (56%), Gaps = 29/531 (5%)
Query: 64 QLVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQ 123
++V++AA++ +KSGKALVSRQFV+M++ RIEGLLAAFPKL+ G+QHT+VETE+VRYVYQ
Sbjct: 285 KMVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 344
Query: 124 PLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVAL 183
P++ LY+LLIT K SNILEDL+TLRL S++VPEY L E V AF L+FAFDE ++L
Sbjct: 345 PIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISL 404
Query: 184 GYRESVNLAQVRSFVEMDS-----HEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAA 238
G +E+V + QV+ + EM+S H+ + + +T+ ++R +L+
Sbjct: 405 GNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDKG 464
Query: 239 KRGQ--PPRXXXXXXXXXXXXXXXXXXXXX---------XIAEKIPT-TPARDTRTVGRS 286
PR A K P+ G+
Sbjct: 465 GYSSISGPRVIEKTFNDMSITGSGFGSGSGLGGLGMDMDSFASKPKGGRPSAAATAPGKG 524
Query: 287 -AMKLGSRGTDADSFVSRLRSEGDVTAP-VASAAQHDAGKPVPADHKDVHLRFEERLNLI 344
MKLG + + F+ L++EG+V V ++ P+P V + EE+LN+
Sbjct: 525 LGMKLG-KTQKTNQFLESLKAEGEVILEDVQPSSVQSRASPLPPSDP-VTVTIEEKLNVT 582
Query: 345 AGRDGDIQTFELSGLLTLRISNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIG 404
RDG + F++ G L L++ N+ G I + ++N+D L +THPN++K+ F S V+G
Sbjct: 583 VKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQVVG 642
Query: 405 LKQAQRPFPM-HSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGG-CDVNIEYELEQDH 462
K RPFP ++ ++KWR+ ++ L PLSVNCWPS V+G VNIEYE +
Sbjct: 643 AKDPNRPFPSGQNETPLVKWRIQGMDESSL-PLSVNCWPS--VSGSETYVNIEYE-AAEM 698
Query: 463 LVLTDVNITIPLPSGNTSVVVHQWEGSYTQKGRN--LIWSIPLVSKQQKTGSLEFTVTPS 520
L +V I+IPLP+ + V Q +G + RN L WSI L+ + ++GS+EF V P+
Sbjct: 699 FDLHNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPA 758
Query: 521 IPNDFFPLSVTWTSETSLALLTAVKVTQAEDGSPVDFSQEISFHADKYEFV 571
P+ FFP+S+ +++ ++ + L + +DG+P +SQ A Y+ V
Sbjct: 759 DPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 809
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 293 bits (720), Expect = 2e-79
Identities = 189/527 (35%), Positives = 281/527 (53%), Gaps = 55/527 (10%)
Query: 65 LVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 124
LV++AA++ +KSGKALVSRQFV+M++ RI+GLLAAFPKL+ G+QHT+VETE+VRYVYQP
Sbjct: 58 LVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 117
Query: 125 LDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG 184
++ LY+LLIT K V AF LLFAF E ++LG
Sbjct: 118 IEALYLLLITNKQKG--------------------------VCKAAFELLFAFIEAISLG 151
Query: 185 YRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAAKRGQPP 244
+E+V +AQV+ + EM+SHEEK+++ V Q++ +++ + + RG+P
Sbjct: 152 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTD---RGKPD 208
Query: 245 RXXXXXXXXXXXXXXXXXXXXXXIAEKI--------------PTTPA-RDTRTVGRSAMK 289
+ + I P+ PA T MK
Sbjct: 209 KGGFGSLRTPNSFSDMGIRGGGPGGDPIFGDMDSFTHKAKGRPSAPAPASASTKVPGGMK 268
Query: 290 LGSRGTDADSFVSRLRSEGDVTAPVA--SAAQHDAGKPVPADHKDVHLRFEERLNLIAGR 347
L S+ + F+ L++EG+V SA Q + P+D + + EE+LN+ R
Sbjct: 269 L-SKAQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSD--PITVTIEEKLNVTVKR 325
Query: 348 DGDIQTFELSGLLTLRISNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQ 407
DG + F++ G L L+I N+ G I + ++N+D L +THPN++KE F S ++G K
Sbjct: 326 DGGVSNFDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQIVGAKD 385
Query: 408 AQRPFPM-HSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLT 466
RPFP ++ ++KWR+ N+ L PL+VNCWPS N VNIEYE + L
Sbjct: 386 PNRPFPSGQNETPLVKWRIQELNESSL-PLAVNCWPSVSGN-ETYVNIEYE-ASEMFDLH 442
Query: 467 DVNITIPLPSGNTSVVVHQWEGSYTQKGRN--LIWSIPLVSKQQKTGSLEFTVTPSIPND 524
+V I+IPLP+ + V Q +G + RN L WSI LV + ++GSLEFTV + P+
Sbjct: 443 NVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPST 502
Query: 525 FFPLSVTWTSETSLALLTAVKVTQAEDGSPVDFSQEISFHADKYEFV 571
FFP+SV +++ + + L + +GSP FSQ Y+ V
Sbjct: 503 FFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 549
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 288 bits (706), Expect = 9e-78
Identities = 194/560 (34%), Positives = 291/560 (51%), Gaps = 54/560 (9%)
Query: 61 FKKQLVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRY 120
F LV++AA++ +KSGKALVSRQFV+M++ RIEGLLAAFPKL+ G+QHT+VETE+VRY
Sbjct: 81 FALLLVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRY 140
Query: 121 VYQPLDKLYMLLITTKASNI---LEDLETL-RLFSRVV---------------------- 154
VYQP++ LY+LLIT K SNI L+ L L +L R V
Sbjct: 141 VYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLALRAVSTEATLWCLAGALVLQVFLFPQ 200
Query: 155 -PEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDS-----HEEKIY 208
PEY L E V AF L+FAFDE + LG +E+V + QV+ + EM+S H+ +
Sbjct: 201 VPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHKLMMQ 260
Query: 209 QAVRQTQXXXXXXXXXXXXXXLQRERLEAAKRG--QPPRXXXXXXXXXXXXXXXXXXXXX 266
+ +T+ ++R +L+ PR
Sbjct: 261 SKINETRDVMKKKASELDKMKMERGKLDKGGYSAISGPRVVEKAFGDMSITGSGFGSGSG 320
Query: 267 ---------XIAEKIPT-TPARDTRTVGRS-AMKLGSRGTDADSFVSRLRSEGDVTAP-V 314
A K P+ G+ MKLG + + F+ L++EG+V V
Sbjct: 321 LGGLSMDMDSFASKPKGGRPSAAATAPGKGLGMKLG-KTQKTNQFLESLKAEGEVILEDV 379
Query: 315 ASAAQHDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFELSGLLTLRISNEQFGRIHV 374
++ P+P V + EE+LN+ RDG + F++ G L L++ N+ G I +
Sbjct: 380 QPSSVQSRVSPLPPSDP-VTVTIEEKLNVTVKRDGGVNNFDVQGTLALQVLNDTDGFIQL 438
Query: 375 HVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATTNDDKL 433
++N+D L +THPN++K+ F S V+G K RPFP ++ ++KWR+ ++ L
Sbjct: 439 QIENQDVPGLSFKTHPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKWRIHGMDESSL 498
Query: 434 APLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEGSYTQK 493
PLSVNCWPS N VNIEYE + L +V I+IPLP+ + V Q +G +
Sbjct: 499 -PLSVNCWPSVSGN-ETYVNIEYE-AAEMFDLHNVVISIPLPALREAPSVRQIDGEWRYD 555
Query: 494 GRN--LIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAED 551
RN L WSI L+ + ++GS+EF V P+ P+ FFP+S+ +++ ++ + L + +D
Sbjct: 556 SRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKD 615
Query: 552 GSPVDFSQEISFHADKYEFV 571
G+P +SQ Y+ V
Sbjct: 616 GNPPKYSQRARLVTANYQVV 635
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 167 bits (405), Expect = 3e-41
Identities = 98/289 (33%), Positives = 158/289 (54%), Gaps = 10/289 (3%)
Query: 288 MKLGSRGTDADSFVSRLRSEGDVTAP-VASAAQHDAGKPVPADHKDVHLRFEERLNLIAG 346
MKLG+ + F+ L++EG+V + P+P V + EE+LN+
Sbjct: 393 MKLGNT-KKTNQFLESLKAEGEVIMEDFQPCSLQSRSSPLPPSDP-VTVAVEEKLNVAVK 450
Query: 347 RDGDIQTFELSGLLTLRISNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLK 406
RDG + F++ G L L + N+ G I + ++++D L +THPN++K+ F S ++G K
Sbjct: 451 RDGGVNNFDVQGTLALLVLNDADGLILLQIESQDIPGLSFKTHPNINKDLFNSQQILGAK 510
Query: 407 QAQRPFPM-HSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVL 465
RPFP ++ ++KWR+ N+ L PLSVNCWPS + VNIEYE + L
Sbjct: 511 DPIRPFPSGQNETPLVKWRIQGMNESSL-PLSVNCWPSI-LGNETYVNIEYE-ASEMFDL 567
Query: 466 TDVNITIPLPSGNTSVVVHQWEGSYTQKGRN--LIWSIPLVSKQQKTGSLEFTVTPSIPN 523
V I+IPLP+ + V Q +G + RN L WSI L+ + ++GS+EF V P+ P+
Sbjct: 568 HSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPS 627
Query: 524 DFFPLSVTWTSETSLALLTAVKVTQAEDGS-PVDFSQEISFHADKYEFV 571
F+P+SV +++ + + + + +GS P +SQ + AD Y+ V
Sbjct: 628 MFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 676
Score = 109 bits (262), Expect = 6e-24
Identities = 51/87 (58%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 66 VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPL 125
V++AA++ +KSGKALVSRQ+V+MT+ RIEGLLAAFPKL+ G+QHT++ETE+VRYVYQP+
Sbjct: 120 VVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQPI 179
Query: 126 DKLYMLLITTKASNILEDLETLRLFSR 152
+ LY+++IT K N+ L T + R
Sbjct: 180 EGLYLVVITNK-QNLHSPLTTKGVICR 205
Score = 67.3 bits (157), Expect = 3e-11
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 147 LRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEK 206
L L + VPEYC L + V AF L+FAFDE ++LG +E V + QV+ + EMDS EE
Sbjct: 235 LNLNNVKVPEYCPSLDDDGVCKTAFELIFAFDEAISLGNKEKVTVQQVKEYCEMDSVEEM 294
Query: 207 IYQAVRQTQXXXXXXXXXXXXXXLQRERLEAAKRGQ 242
Y+ + Q + +++ R+E K +
Sbjct: 295 EYKQMMQEKIKETKDFMKKKVIEIEKTRMEKGKHNK 330
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 39.9 bits (89), Expect = 0.005
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 510 TGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGS-PVDFSQEISFHADKY 568
+GS+EF V P+ P+ FFP+SV +++ + + + + ++GS P +SQ + AD Y
Sbjct: 208 SGSMEF-VPPADPSMFFPISVGFSTSNTFSDVKVPGIRPLKEGSNPPKYSQRVRLVADNY 266
Query: 569 EFV 571
+ V
Sbjct: 267 QVV 269
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 36.7 bits (81), Expect = 0.050
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 74 TKSGKALVSRQFVEMT-KARIEGLLAAFPKLMTGG-RQHTFVETESVRYVYQPLDKLYML 131
++ GK +++ + T K R + + ++T G + FVE + + VY+ LY
Sbjct: 120 SRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWKGYKVVYRRYASLYFC 179
Query: 132 LITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG 184
+ N LE LE + F V+ Y + E +++ + DEI+ G
Sbjct: 180 MCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 232
>02_05_0615 - 30364956-30365729,30365813-30366286
Length = 415
Score = 32.7 bits (71), Expect = 0.81
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 59 GLFKKQLVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG 107
GL L+L+A TVC S L +RQ+++ T AR A++ GG
Sbjct: 16 GLLLILLLLVAFTVCNYSSLKLSTRQYIDGTSARSSSTRASYASGGGGG 64
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 31.9 bits (69), Expect = 1.4
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 116 ESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLF 175
+ V Y++ + L+ ++ T + LE L+ +RV +Y L E + L + F L++
Sbjct: 54 DGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNE-DSLRKNFILVY 112
Query: 176 AF-DEIVALGYRESVNLAQVRSFV 198
DE++ GY ++ + ++S++
Sbjct: 113 ELLDEVIDFGYPQTTSTEVLKSYI 136
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 30.3 bits (65), Expect = 4.3
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 411 PFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEG-VNGGCDVNIEYELEQDHLVLTDVN 469
P P++ +L+ T DDKL + V S + G DVN+ E L V+
Sbjct: 136 PDPIYEATRLLQDSRTKTYDDKLYKIVVAMGTSRSSILGELDVNLAEFAE----ALKPVS 191
Query: 470 ITIPLPSGNTSVVVHQWE 487
I +PL ++H WE
Sbjct: 192 IALPLRGCEFGTILHVWE 209
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 30.3 bits (65), Expect = 4.3
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 270 EKIPTTPARDTRTVGRSAMKLGSRGTDADSFVSRLRSEGDVTAPVA-SAAQHDAGKPVPA 328
+K+ T R+T V + +L ++ + R EGD + V S + D + VP
Sbjct: 458 KKVKVTDIRNTDEVSPESAELSTKPS---------REEGDQSQEVPISREEGDQSQEVPF 508
Query: 329 DHKDV-HLRFEERLNLIAGRDGDIQTFE 355
+K + H E L IAG+ G + T+E
Sbjct: 509 SNKQMDHNLLEHELVSIAGKGGSLGTYE 536
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.9 bits (64), Expect = 5.7
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 402 VIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQD 461
+ G A + FP D ++ TNDD +C S+ N C+VNI ++ D
Sbjct: 197 ITGSSVAHQEFPPQEDGHNADNNISNTNDDDTTNNHASCPISDHSNQACNVNIIHQGVDD 256
Query: 462 HL 463
+
Sbjct: 257 SI 258
>03_02_0804 +
11374219-11374221,11374326-11374473,11374556-11374629,
11374736-11375233,11375749-11376093,11376178-11376390,
11376669-11377457,11377686-11377769
Length = 717
Score = 29.9 bits (64), Expect = 5.7
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 310 VTAPVASAAQHDAGKPVPADHKDVHLR-FEERLNLIAGRDGDIQTFELSGLLTLRISNEQ 368
VT PV +++ GK + H++ + ++G G + S L + I +Q
Sbjct: 230 VTVPVDASSTDKDGKSDEGNQSKEHVQSIQVTSGPMSGESGQGKATSNSTLEKIMIHPDQ 289
Query: 369 FGRIHVHVDNKDSRPLQLQTHPNVD 393
+ ++H VD+ D++ ++++ D
Sbjct: 290 YNKVHFPVDHPDAKFFVIKSYSEDD 314
>03_01_0217 - 1712979-1713794
Length = 271
Score = 29.9 bits (64), Expect = 5.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 298 DSFVSRLRSEGDVTAPVASAAQHDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQ 352
D F +R V P +A + D P PA DV R EE ++ G D+Q
Sbjct: 39 DPFEEVMRCLSAVDDPFLAAFKLDCSPPTPAADADVDSRSEEHMHADVGGGLDLQ 93
>01_06_0890 - 32750722-32750732,32750800-32750986
Length = 65
Score = 29.5 bits (63), Expect = 7.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 292 SRGTDADSFVSRLRSEGDVTAPVASAAQHDAGK 324
SR T+ D V R GDVTA V A + AG+
Sbjct: 19 SRPTEKDDVVEEKRDGGDVTAAVPRLAVYGAGR 51
>12_01_0662 +
5601147-5601176,5601419-5601517,5601601-5601651,
5602822-5602995,5603869-5603928,5604759-5604800
Length = 151
Score = 29.1 bits (62), Expect = 10.0
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 112 FVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAF 171
FVE + + +Y+ L+ + N L LE + LF ++ + + E +++
Sbjct: 58 FVEFRTHKVIYRRYAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFH 117
Query: 172 NLLFAFDEIVALG-YRESVNLAQVRSFVEMDSHE 204
+ DE + G +E+ A + E++ E
Sbjct: 118 KVYLILDEFILAGELQETSKRAIIERMGELEKLE 151
>08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895
Length = 227
Score = 29.1 bits (62), Expect = 10.0
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 101 PKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQ 160
P L +G Q +FVE + + VY+ L+ L+ N L LE + LF + +
Sbjct: 90 PVLGSGSVQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLFVETMDRHFGN 149
Query: 161 LTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIY 208
+ N F+ + I +G + N + +++ H EK++
Sbjct: 150 VVFFSNPNNYFSCDCKYAHIYHMGQADG-NYPFGQCELDIMFHLEKVH 196
>07_03_1050 -
23570785-23570824,23570938-23571004,23571114-23571196,
23572028-23572201,23572268-23572471,23572570-23573300
Length = 432
Score = 29.1 bits (62), Expect = 10.0
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 346 GRDGDIQTFELSGLLTLRISNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGL 405
GR G T L GL T+R+ + G+ HV V +D+R + TG G
Sbjct: 223 GRTGCSLTSLLMGLNTIRVVEREHGQYHV-VLVEDARKKYMDCLGLAHSCNLMDTGT-GS 280
Query: 406 KQAQRPFPMHS 416
Q FP+HS
Sbjct: 281 NQIYMTFPVHS 291
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,844
Number of Sequences: 37544
Number of extensions: 622436
Number of successful extensions: 1279
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 27
length of query: 571
length of database: 14,793,348
effective HSP length: 86
effective length of query: 485
effective length of database: 11,564,564
effective search space: 5608813540
effective search space used: 5608813540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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