Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000104-TA|BGIBMGA000104-PA|IPR008968|Mu2 adaptin subunit
(AP50) of AP2, IPR001392|Clathrin adaptor complex, medium chain,
IPR011012|Longin-like
(571 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 400 e-111
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 37 0.033
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 34 0.31
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 32 0.95
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 31 2.2
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 31 2.2
U39678-2|AAL16315.1| 133|Caenorhabditis elegans Hypothetical pr... 31 2.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 31 2.9
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 31 2.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 31 2.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 31 2.9
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 31 2.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 31 2.9
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 30 5.1
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 30 5.1
U70845-4|AAB09102.1| 340|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z81547-4|CAB04458.1| 368|Caenorhabditis elegans Hypothetical pr... 29 8.9
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 8.9
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 400 bits (984), Expect = e-111
Identities = 212/524 (40%), Positives = 319/524 (60%), Gaps = 26/524 (4%)
Query: 65 LVLIAATVCTKSGKALVSRQFV-EMTKARIEGLLAAFPKLM-----TGGRQHTFVETESV 118
+VLIAA + +K+GK LV+RQFV +M ++R+EGL+ AFPKL+ RQHTFVET+SV
Sbjct: 1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60
Query: 119 RYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFD 178
RYVY PLD +Y++L+TTK SNILEDLETLRLF RV+PEYC E E+L F+L+FAFD
Sbjct: 61 RYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFD 120
Query: 179 EIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAA 238
E+V LGYRESVNLAQ+R+F EMDSHEE+++ +++ Q L+R + EA
Sbjct: 121 EVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKEAL 180
Query: 239 KRGQPPRXXXXXXXXXXXXXXXXXXXXXXIAEKIPTTPARDTRTV-GRSAMKLGSRGTDA 297
RG P ++E P+ + G A+KLG + +
Sbjct: 181 SRGLKP-----SYQSSTGISSSSTPNAAAVSEPAAPRPSAPKGPIGGGKALKLGGKTNNE 235
Query: 298 DSFVSRLRSEGDVTAPVASAAQHDAGKPVPA--------DHKDVHLRFEERLNLIAGRDG 349
D F+ LR +G APV A+ + A + VH+R EE++N RDG
Sbjct: 236 DDFLDTLRQQGQSIAPVQKASLSGGVSSLAAPISTAPRVKREVVHVRTEEKINTRVSRDG 295
Query: 350 DIQTFELSGLLTLRISNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQ 409
+++ E+ +TL I + +F I + ++N + QLQ HPN+DK+ ++S+ + +K
Sbjct: 296 GLESGEVQATVTLSIGSPEFIPISIKMNNGSAAGTQLQVHPNLDKKEWQSSSTLKIKPNG 355
Query: 410 RPFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVN 469
+P+P++SDVG+LKW++A + +++L P+S NCWP E + G VNIEY L+++ + L +V
Sbjct: 356 KPYPVNSDVGILKWKMALSEEEQL-PISFNCWPQES-SDGVQVNIEYTLQREDITLNNVR 413
Query: 470 ITIPLPSGNTSVVVHQWEGSYT-QKGRN-LIWSIPLVSKQQKTGSLEFTVTPSIPNDFFP 527
I +PLP+ T+ V + +G Y K +N ++WS+ ++ +G+LEF+V + FFP
Sbjct: 414 IIVPLPTA-TAPSVGECDGEYEYHKTKNVIVWSLAVIDSSNSSGTLEFSVPNGHCDHFFP 472
Query: 528 LSVTWTSETSLALLTAVKVTQAEDGSPVDFSQEISFHADKYEFV 571
+SV +TSE +T KV + DGSPV +S E +F+++ +E V
Sbjct: 473 VSVGFTSENLFVPITVQKVVK-NDGSPVTYSVETTFNSENFEIV 515
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 37.1 bits (82), Expect = 0.033
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Query: 77 GKALVSRQFV-EMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITT 135
G ++SR + ++ + IE + + G + + + Y Y +Y++ I+
Sbjct: 13 GNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKYMNVYLVTISK 72
Query: 136 KASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVR 195
K +N++ L L V EY L E V + + FDE++ GY ++ ++
Sbjct: 73 KNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQTTESKILQ 132
Query: 196 SFV 198
F+
Sbjct: 133 EFI 135
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.31
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 75 KSGKALVSRQFVEMTKARIEGLLAAFPKLMT-GGRQHT-FVETESVRYVYQPLDKLYMLL 132
++GK +++ ++ + L+ +T +HT FVE + + VY+ LY +
Sbjct: 10 RAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCI 69
Query: 133 ITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG-YRESVNL 191
N L LE + F V+ EY + E +++ + + DE+ G RE+
Sbjct: 70 CVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQT 129
Query: 192 AQVRSFVEMDSHE 204
++ + + S E
Sbjct: 130 KVLKQLLMLTSLE 142
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 32.3 bits (70), Expect = 0.95
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 79 ALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKAS 138
A +Q ++ + I +LA PK+ F+E + ++ VY+ LY +
Sbjct: 22 AYPDKQKKKICRELITQILARKPKMCA------FLEYKDLKVVYKRYASLYFCCAIEQND 75
Query: 139 NILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQV 194
N L LE + + ++ +Y + E +++ F DE + G + + QV
Sbjct: 76 NELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGEIQETSKKQV 131
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 484 HQWEGSYTQKGRNLIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLS 529
H+ +G YT+K + ++ + KQ++ +E T+ ND F LS
Sbjct: 447 HRKDGQYTKKSKMILGQVQQRQKQEEDEQMESTMAQFTDNDPFNLS 492
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 484 HQWEGSYTQKGRNLIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLS 529
H+ +G YT+K + ++ + KQ++ +E T+ ND F LS
Sbjct: 447 HRKDGQYTKKSKMILGQVQQRQKQEEDEQMESTMAQFTDNDPFNLS 492
>U39678-2|AAL16315.1| 133|Caenorhabditis elegans Hypothetical
protein C39D10.8a protein.
Length = 133
Score = 30.7 bits (66), Expect = 2.9
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 445 GVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQ-WEGSYTQKGRNLIWSIPL 503
G+ G N E+++E TD ITI SV+ H+ WEG Y Q R+ I +P
Sbjct: 67 GLGPGTTKNSEFKVEH-----TDNVITIRCKYRVQSVLAHETWEGEYIQYWRSEIGQMPK 121
Query: 504 VSKQQ 508
+ + +
Sbjct: 122 IIRDE 126
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.7 bits (66), Expect = 2.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 351 IQTFELSGLLTLRISN---EQFGRIHVHVDN---KDSRPLQLQTHPNVDKEAFRS 399
I T + + TL+ISN EQ G + V N +DS+ L+ PNV F+S
Sbjct: 2121 ITTIKTEDVYTLKISNPKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKS 2175
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 30.7 bits (66), Expect = 2.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 351 IQTFELSGLLTLRISN---EQFGRIHVHVDN---KDSRPLQLQTHPNVDKEAFRS 399
I T + + TL+ISN EQ G + V N +DS+ L+ PNV F+S
Sbjct: 1481 ITTIKTEDVYTLKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKS 1535
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.7 bits (66), Expect = 2.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 351 IQTFELSGLLTLRISN---EQFGRIHVHVDN---KDSRPLQLQTHPNVDKEAFRS 399
I T + + TL+ISN EQ G + V N +DS+ L+ PNV F+S
Sbjct: 2121 ITTIKTEDVYTLKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKS 2175
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.7 bits (66), Expect = 2.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 351 IQTFELSGLLTLRISN---EQFGRIHVHVDN---KDSRPLQLQTHPNVDKEAFRS 399
I T + + TL+ISN EQ G + V N +DS+ L+ PNV F+S
Sbjct: 2121 ITTIKTEDVYTLKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKS 2175
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 30.7 bits (66), Expect = 2.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 351 IQTFELSGLLTLRISN---EQFGRIHVHVDN---KDSRPLQLQTHPNVDKEAFRS 399
I T + + TL+ISN EQ G + V N +DS+ L+ PNV F+S
Sbjct: 1481 ITTIKTEDVYTLKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKS 1535
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.7 bits (66), Expect = 2.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 351 IQTFELSGLLTLRISN---EQFGRIHVHVDN---KDSRPLQLQTHPNVDKEAFRS 399
I T + + TL+ISN EQ G + V N +DS+ L+ PNV F+S
Sbjct: 2121 ITTIKTEDVYTLKISNAKIEQTGTVKVTAQNSAGQDSKQADLKVEPNVKAPKFKS 2175
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 29.9 bits (64), Expect = 5.1
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 128 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 187
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 188 SVNLAQVRSFV 198
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 29.9 bits (64), Expect = 5.1
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 128 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 187
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 188 SVNLAQVRSFV 198
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>U70845-4|AAB09102.1| 340|Caenorhabditis elegans Hypothetical
protein F22H10.5 protein.
Length = 340
Score = 29.5 bits (63), Expect = 6.7
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 49 KIDKHSGPDCGLFKKQLVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPK--LMTG 106
K +H+ + + +L + + + A V+ FV+M A++ ++ P L
Sbjct: 132 KCGEHTQGIDAVIAELAILKSLSALSTKNHANVTENFVKMVMAKV--VIGKHPTSLLKAW 189
Query: 107 GRQHTFVETESVRYVYQPLDKLYMLLITTKASNILE--DLETLRLFSRVVPE--YCVQLT 162
E+E++R ++LY++LI +K LE +E++ F ++ + Y + +
Sbjct: 190 DTYRVEEESENIRPSKFNKNQLYLVLILSKGGTALEKFKMESIDQFHSIMQQLVYSLAIA 249
Query: 163 ETEV 166
ETE+
Sbjct: 250 ETEL 253
>Z81547-4|CAB04458.1| 368|Caenorhabditis elegans Hypothetical
protein F53F8.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 8.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 302 SRLRSEGDVTAPVASAAQHDAGKPVPADHKDVHLRFEE 339
+R+ + G + A +S+++H GKP P H+ H++ +
Sbjct: 89 ARITAPGALLASSSSSSEHRRGKPPPDRHEIYHVKMPD 126
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 118 VRYVYQPLDKLYMLLITTKASNILEDLETLRLFS--RVVPEYCVQLTETEVLN 168
V VY P D L I + A ++LED +T+RL S ++ PE +L + EVL+
Sbjct: 252 VSIVYPPCDVEAFLNIESVAESLLEDTKTVRLLSVGQIRPEKNHKL-QLEVLH 303
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,824
Number of Sequences: 27539
Number of extensions: 522902
Number of successful extensions: 1108
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 30
length of query: 571
length of database: 12,573,161
effective HSP length: 85
effective length of query: 486
effective length of database: 10,232,346
effective search space: 4972920156
effective search space used: 4972920156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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