GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000103-TA|BGIBMGA000103-PA|IPR003034|DNA-binding SAP,
IPR003877|SPla/RYanodine receptor SPRY, IPR001870|B302, (SPRY)-like
         (1282 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    31   0.067
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    27   0.62 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   1.9  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 30.7 bits (66), Expect = 0.067
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 122 KDEQLAKEPNNRNESDEQ-----EDDKAMDTQESTGPDDAKKHTAETMEHDGDDTEAKKQ 176
           K+ ++  EP N+ + D+       DD+  D ++    DD   H     E +G D +    
Sbjct: 144 KENKMTWEPKNKTDDDDDALVSDSDDREKDEEDKR--DDTDMHGRIKSERNGKDLDDDDM 201

Query: 177 KNEESKED 184
            +++ K+D
Sbjct: 202 NDDDRKDD 209


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 113 EESTESQPTKDEQLAKEPNNRNESD 137
           E+ TES  T+  Q  K P + NESD
Sbjct: 416 EQPTESSTTQKPQTTKTPESGNESD 440



 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 604 NGENKTEKKDDSKPEPMETDEP 625
           N  N   K D+  PEP+ T EP
Sbjct: 380 NAINAALKSDEIPPEPVPTPEP 401


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 276 RKEAKSANSKEQGKGKNKDAQPPPEIRVPEPELDDNKVTL 315
           RKE K+   K++    N      P++   EPEL D++ TL
Sbjct: 268 RKEKKAQKEKDK---PNSTTNGSPDVIKVEPELSDSEKTL 304


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,665
Number of Sequences: 317
Number of extensions: 7275
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 4
length of query: 1282
length of database: 114,650
effective HSP length: 65
effective length of query: 1217
effective length of database: 94,045
effective search space: 114452765
effective search space used: 114452765
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)