GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000103-TA|BGIBMGA000103-PA|IPR003034|DNA-binding SAP,
IPR003877|SPla/RYanodine receptor SPRY, IPR001870|B302, (SPRY)-like
         (1282 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.98 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   3.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   5.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   6.9  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    24   6.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 116 TESQPTKDEQLAKEPNNRNESDEQEDDKAMDTQE--STGPDDAKKHTAETMEHDGDDTEA 173
           T + PT+  +L K   N  E  +  DD   + +E    G  +A+K      + DG  +  
Sbjct: 258 TTTIPTR--RLRKRRQNDGEGADDRDDDEENEEEEDGRGQSEAEKRLKLDEDADGAVSPL 315

Query: 174 KKQKNEESKEDKT 186
           +++K+  S+E  T
Sbjct: 316 RREKDRGSREYPT 328


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 243 RLKRKYEKKARWSNFYKTVEATNEILTPPEPLIRKEAKSANSKEQGKGKNKDAQPPPEIR 302
           RL+R+ E KA   N  + +        PP P +R+EA+S    E   G N+     P+ R
Sbjct: 59  RLRREAEPKAEPGN-NRPIYIPQP--RPPHPRLRREAES----EAEPGNNRPVY-IPQPR 110

Query: 303 VPEPEL 308
            P P L
Sbjct: 111 PPHPRL 116


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 231 LEELSDNPVKLQRLKRKYEKKARWSNFYKTVEATN 265
           +E L+   VK   +   + ++   SN Y+T+EA N
Sbjct: 683 MENLTCATVKGSAVDMYFRRQVELSNMYRTMEANN 717


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 415 NNGEYKEYGKSLNEKDVVGAYLDLESEPCVVSYTLN 450
           N  EY++YGK+  E+       +   EP ++S   N
Sbjct: 274 NEREYRKYGKTSKERSRDRMERERSKEPKIISSLSN 309


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 270 PPEPLIRKEAKSANSKEQGKGKNKDAQPPPEIRVPEPEL 308
           PP P +R+EAK     E   G N+     P+ R P P L
Sbjct: 138 PPHPRLRREAK----PEAEPGNNRPVY-IPQPRPPHPRL 171


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 232 EELSDNPVKLQRLKRKYEKKARWSNFYKTVEATNEILTPPEP-LIRKEAKSA 282
           E +  N  +LQ++K +  +     +   TVE   +I+ P +  LIR+  + +
Sbjct: 108 EGIQINATELQKIKLEIHRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGS 159


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,879
Number of Sequences: 429
Number of extensions: 10149
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 11
length of query: 1282
length of database: 140,377
effective HSP length: 66
effective length of query: 1216
effective length of database: 112,063
effective search space: 136268608
effective search space used: 136268608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)