Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000102-TA|BGIBMGA000102-PA|undefined
         (777 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      31   0.023
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      31   0.023

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 31.5 bits (68), Expect = 0.023
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 686 NDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAK 733
           N D ++  E  ++KP S+   +   VD +NN     N Q G+  E+ K
Sbjct: 429 NFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKK 476


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 31.5 bits (68), Expect = 0.023
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 686 NDDVVVAPETTADKPVSELPNENKTVDTENNDESKANEQTGDMAEEAK 733
           N D ++  E  ++KP S+   +   VD +NN     N Q G+  E+ K
Sbjct: 321 NFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKK 368


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,505
Number of Sequences: 317
Number of extensions: 5304
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 777
length of database: 114,650
effective HSP length: 62
effective length of query: 715
effective length of database: 94,996
effective search space: 67922140
effective search space used: 67922140
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)